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BaseInfo

ncRNA ID	osa-miR5524
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:3278054-3278337 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	254 - UGGAAAAUGUGUUCAUGACGG - 274
Stem-loop(if miRNA)	GAA      - G UAA      -   UA       UAAUAGUA        -  AUU   -- GAUGUGAUCAGCAAAAGUAUCAUCAACAAAGGUUCAAGUUUGUAUAUGUUUUGGUUUGAGUAAGAAGAUAGCGAAUGAAAAGGAAU    GAAUGG C G   UCGUGA CAU  UUUCUAU        ACCAAAUA AU   GUC  A                                                                                      G    |||||| | |   |||||| |||  |||||||        |||||||| ||   |||  |                                                                                      C    CUUAUC G C   AGUACU GUG  AAAGGUA        UAUAGAGA AU   CUU  C                                                                                      C UAA      U G ---      U   UA       ------UA        G  ---   GA AACUAAGAAUUGACGCUAAUCGUAUCAGAGAUGUUUUUAUAGAACUGAGUUUGUUAAUUGUGUAUGGUUAGGGAGUUGUACGUUCC
Stem-loop sequence	GAAGAAUGGCGGUAAUCGUGACAUUAUUUCUAUUAAUAGUAACCAAAUAAUAUUGUCAGAUGUGAUCAGCAAAAGUAUCAUCAACAAAGGUUCAAGUUUGUAUAUGUUUUGGUUUGAGUAAGAAGAUAGCGAAUGAAAAGGAAUGCCCCUUGCAUGUUGAGGGAUUGGUAUGUGUUAAUUGUUUGAGUCAAGAUAUUUUUGUAGAGACUAUGCUAAUCGCAGUUAAGAAUCAACAGUUCUAGAGAGAUAUAUAUGGAAAAUGUGUUCAUGACGGUCUAUUCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288297.1	ncRNA:21   GGCAGUACUUGUGUAAAAGGU   1   *=*|||||*|||||||||||| targets:2841   AUUUCAUGCACACAUUUUCCA   2861 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019L12, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).