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BaseInfo

ncRNA ID novel_zma_miR3437
Species Zea mays
Class miRNA
Genome position Chr1:85011240-85011461 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 199 - ACCGGCUCACCAUCGUCUGGCCUC - 222
Stem-loop(if miRNA) --                           C                               C             U                    U  C  CUA     A
  GGCCAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGC GCCUCGGCUUCAU UGUGCGCUUCUCUUCUCUUA GU GG   CUAAG U
  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||   |||||
  CCGGUCUGCUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCG CGGGGCCGAAGUA ACACGCGAAGAGAAGAGAAU CA CC   GAUUC C
CU                           U                               A             C                    C  C  CAC     A
Stem-loop sequence GGCCAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCUCGGCUUCAUUUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCGCACACAUGAAGCCGGGGCAGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCGUCUGGCCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:24   CUCCGGUCUGCUACCACUCGGCCA   1
  |||-||||||||||||||||||||
targets:3203   GAG-CCAGACGAUGGUGAGCCGGU   3225

0.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:24   CUCCGGUCUGCUACCACUCGGCCA   1
  |||-||||||||||||||||||||
targets:3341   GAG-CCAGACGAUGGUGAGCCGGU   3363

0.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget