ncRNA ID | novel_zma_miR3437 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:85011240-85011461 [+] |
Reference genome | RefGen_v4 |
Source | SRR2089715 |
Length | 24 |
Mature sequence(if miRNA) | 199 - ACCGGCUCACCAUCGUCUGGCCUC - 222 |
Stem-loop(if miRNA) |
--                           C                               C             U                    U  C  CUA     A   GGCCAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGC GCCUCGGCUUCAU UGUGCGCUUCUCUUCUCUUA GU GG   CUAAG U   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||   |||||   CCGGUCUGCUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCG CGGGGCCGAAGUA ACACGCGAAGAGAAGAGAAU CA CC   GAUUC C CU                           U                               A             C                    C  C  CAC     A |
Stem-loop sequence | GGCCAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCUCGGCUUCAUUUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCGCACACAUGAAGCCGGGGCAGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCGUCUGGCCUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020538582.1 |
|
0.0 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020538581.1 |
|
0.0 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA | NA | coding protein | psRNATarget |