Search result

BaseInfo

ncRNA ID	novel_zma_miR3436
Species	Zea mays
Class	miRNA
Genome position	Chr1:75510919-75511052 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - AGGGGCUUGUUCGUUUUGGAGUGG - 24
Stem-loop(if miRNA)	--A                                                        A    CAA    GGGGCUUGUUCGUUUUGGAGUGGAUUGAGGGGGAUUGGAGGGGAUUAAAUCCCCUC UAUA   A    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    UCCCGAACAAGCAAAACUUCACUUAACUCCCCCUAACCUCCCCUAAUUUAGGGGAG AUAU   U AGA                                                        G    AUU
Stem-loop sequence	AGGGGCUUGUUCGUUUUGGAGUGGAUUGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCAUAUACAAAUUUAUAUAGGAGGGGAUUUAAUCCCCUCCAAUCCCCCUCAAUUCACUUCAAAACGAACAAGCCCUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067853.1	ncRNA:24   GGUGAGGUUUUGCUUGUUCGGGGA   1   ||||||||||||||||||||||=| targets:2215   CCACUCCAAAACGAACAAGCCCUU   2238 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172L19 mRNA, complete cds	NA	coding protein	psRNATarget
BT039068.1	ncRNA:24   GG--UG----AGGUUUUGCUUGUUCGGGGA   1   ||--||----||||||||||||||||||=| targets:1205   CCUAACAGGAUCCAAAACGAACAAGCCCUU   1234 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0368C07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148364.1	ncRNA:24   GG--UG----AGGUUUUGCUUGUUCGGGGA   1   ||--||----||||||||||||||||||=| targets:1346   CCUAACAGGAUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.5	Zea mays DNA replication licensing factor MCM7 (cl18116_1), mRNA	NA	coding protein	psRNATarget
BT042142.1	ncRNA:24   GG--UG----AGGUUUUGCUUGUUCGGGGA   1   ||--||----||||||||||||||||||=| targets:1346   CCUAACAGGAUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0145P12 mRNA, complete cds	NA	coding protein	psRNATarget
EU951778.1	ncRNA:24   GGUGAGGUUUUGCUUGUUCGGGGA   1   =||--|||||||||||||||||=* targets:477   UCA--CCAAAACGAACAAGCCCUA   498 Target Full Sequence	2.5	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget
BT065119.1	ncRNA:24   GGUGAGGUUUUGCUUGUUCGGGGA   1   =||--|||||||||||||||||** targets:491   UCA--CCAAAACGAACAAGCCCAG   512 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676135.2	ncRNA:24   GGUGAGGUUUUGCUUGUUCGGGGA   1   =||--|||||||||||||||||** targets:2888   UCA--CCAAAACGAACAAGCCCAG   2909 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/LRR-repeat protein 3-like (LOC103650561), transcript variant X1, mRNA	NA	coding protein	psRNATarget