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BaseInfo

ncRNA ID novel_zma_miR3435
Species Zea mays
Class miRNA
Genome position Chr8:74880577-74880731 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647389
Length 24
Mature sequence(if miRNA) 1 - CACCUUAGGGCUUGUUCGGUUCUA - 24
Stem-loop(if miRNA) --CA    -               CUACCC                      G     -----------         A  CCC
    CCUU AGGGCUUGUUCGGUU      CAAUCCAUAUGGAUUGAGGGGG AUUGA           GGGGGUUUU AU   U
    |||| |||||||||||||||      |||||||||||||||||||||| |||||           ||||||||| ||   G
    GGAA UCCCGAACAAGCCAA      GUUAGGUAUACCUAACUUCCCC UAACU           UCCCUAAAA UG   G
UCUG    C               -UAAAA                      -     AUGCUUAACCC         C  AAU
Stem-loop sequence CACCUUAGGGCUUGUUCGGUUCUACCCCAAUCCAUAUGGAUUGAGGGGGGAUUGAGGGGGUUUUAAUCCCUGGUAAGUCAAAAUCCCUCCCAAUUCGUAUCAAUCCCCUUCAAUCCAUAUGGAUUGAAAAUAACCGAACAAGCCCUCAAGGGUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001279968.1
ncRNA:24   AUC--UUGGCUUGUUCGGGAUUCCAC   1
  *||--|||||||||||||||||||||
targets:1561   GAGCUAACCGAACAAGCCCUAAGGUG   1586

0.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AUC--UUGGCUUGUUCGGGAUUCCAC   1
  *||--|||||||||||||||||||||
targets:1561   GAGCUAACCGAACAAGCCCUAAGGUG   1586

0.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AUC--UUGGCUUGUUCGGGAUUCCAC   1
  *||--|||||||||||||||||||||
targets:2531   GAGCUAACCGAACAAGCCCUAAGGUG   2556

0.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
BT054737.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  |**|||||||||||||||||||||
targets:217   UCAAACCGAACAAGCCCUAAGGUG   240

0.0 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
XM_020548160.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  |=*|||||||||||||||=|||||
targets:4824   UGUAACCGAACAAGCCCUGAGGUG   4847

1.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  |=*|||||||||||||||=|||||
targets:5051   UGUAACCGAACAAGCCCUGAGGUG   5074

1.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   AUC----UUGGCUUGUUCGGGA-UUCCAC   1
  |||----|||||||||||||||-||||||
targets:2877   UAGGAAUAACCGAACAAGCCCUUAAGGUG   2905

3.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   AUC----UUGGCUUGUUCGGGA-UUCCAC   1
  |||----|||||||||||||||-||||||
targets:2886   UAGGAAUAACCGAACAAGCCCUUAAGGUG   2914

3.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
HI406655.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *||||*=|||=|||||||||||||
targets:175   AAGAAAUGAAUAAGCCCUAAGGUG   198

3.0 Sequence 4780 from Patent EP2074227 NA coding protein psRNATarget
JB167116.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *||||*=|||=|||||||||||||
targets:175   AAGAAAUGAAUAAGCCCUAAGGUG   198

3.0 Sequence 4780 from Patent EP2559767 NA coding protein psRNATarget
LQ238785.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *||||*=|||=|||||||||||||
targets:175   AAGAAAUGAAUAAGCCCUAAGGUG   198

3.0 Sequence 4780 from Patent EP2985353 NA coding protein psRNATarget
XM_020537891.1
ncRNA:24   AUC--UUGGCUUGUUCGGGAUUCCAC   1
  |||--|||=||||||||||||||*||
targets:3020   UAGCUAACUGAACAAGCCCUAAGCUG   3045

2.5 PREDICTED: Zea mays probable serine/threonine protein kinase IREH1 (LOC103625948), transcript variant X2, mRNA NA coding protein psRNATarget
BT055781.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  |=*||||||||||||||||||*||
targets:1640   UGUAACCGAACAAGCCCUAAGAUG   1663

1.5 Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds NA coding protein psRNATarget
NM_001153140.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  |=*||||||||||||||||||*||
targets:1640   UGUAACCGAACAAGCCCUAAGAUG   1663

1.5 Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA NA coding protein psRNATarget
BT061569.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  |=*||||||||||||||||||*||
targets:1829   UGUAACCGAACAAGCCCUAAGAUG   1852

1.5 Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds NA coding protein psRNATarget
EU957313.1
ncRNA:24   AUC----UUGGCUUGUUCGGGAUUCCAC   1
  |=|----||||||||||||||||||*||
targets:762   UGGGAAUAACCGAACAAGCCCUAAGCUG   789

1.5 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   AUC----UUGGCUUGUUCGGGAUUCCAC   1
  |=|----||||||||||||||||||*||
targets:762   UGGGAAUAACCGAACAAGCCCUAAGCUG   789

1.5 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AUC--UUGGCUUGUUCGGGAUUCCAC   1
  *||--|||||||||||||||||*|||
targets:1260   GAGCUAACCGAACAAGCCCUAAUGUG   1285

1.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  ||*|||||||||||||||*||||*
targets:1999   UAUAACCGAACAAGCCCUUAGGUU   2022

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *|*|||||||||||||||||||**
targets:51   AAUAACCGAACAAGCCCUAAGGCA   74

2.5 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
NM_001176157.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  ||*||*|||||||*||||||||||
targets:1211   UAAAAACGAACAAACCCUAAGGUG   1234

2.5 Zea mays Vacuolar iron transporter 1 (LOC100383509), mRNA NA coding protein psRNATarget
BT067444.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  ||*||*|||||||*||||||||||
targets:1211   UAAAAACGAACAAACCCUAAGGUG   1234

2.5 Zea mays full-length cDNA clone ZM_BFc0054L15 mRNA, complete cds NA coding protein psRNATarget
BT083591.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *|*||||||||||||||||||*|*
targets:1212   AAUAACCGAACAAGCCCUAAGUUU   1235

2.5 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
EU973712.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *|*||||||||||||||||||*|*
targets:1316   AAUAACCGAACAAGCCCUAAGUUU   1339

2.5 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   AUCUUGGCUUGUUCGGGAUUCCAC   1
  *|*||||||||||||||||||*|*
targets:1316   AAUAACCGAACAAGCCCUAAGUUU   1339

2.5 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
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