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BaseInfo

ncRNA ID novel_zma_miR3428
Species Zea mays
Class miRNA
Genome position Chr1:72598608-72598699 [-]
Reference genome RefGen_v4
Source SRR2089715;SRR4237227
Length 21
Mature sequence(if miRNA) 1 - UUCCGAACGAGAUUUGAGGUU - 21
Stem-loop(if miRNA) --A       G   -          A       -   A A      UA
   CUCAAAU CUC UUCGGAAUUG AGGGGAU GGG G GGAAAU  G
   ||||||| ||| |||||||||| ||||||| ||| | ||||||
   GAGUUUA GAG AAGCCUUAAC UCUCCUA CUC C UCUUUA  U
UUG       -   C          C       A   - A      CU
Stem-loop sequence ACUCAAAUGCUCUUCGGAAUUGAAGGGGAUGGGAGAGGAAAUUAGUUCAUUUCUACCUCAAUCCUCUCCAAUUCCGAACGAGAUUUGAGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ111591.1
ncRNA:21   UUGGAGUUUAGAGCAAGCCUU   1
  |||||||||||||||||||||
targets:21   AACCUCAAAUCUCGUUCGGAA   41

0.0 TSA: Zea mays contig47252, mRNA sequence NA coding protein psRNATarget
BT086707.2
ncRNA:21   UUGGAGUUUAGAGCAAGCCUU   1
  |||||||||||||||||||||
targets:241   AACCUCAAAUCUCGUUCGGAA   261

0.0 Zea mays full-length cDNA clone ZM_BFb0136H07 mRNA, complete cds NA coding protein psRNATarget