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BaseInfo

ncRNA ID	novel_zma_miR3426
Species	Zea mays
Class	miRNA
Genome position	Chr8:64596879-64596981 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647388
Length	24
Mature sequence(if miRNA)	1 - ACUCCCUCCGAUUUUUUUAUAUGA - 24
Stem-loop(if miRNA)	--   C    C A   U        ACACCGC          AUA   C  CG   ACU CCUC G UUU UUUAUAUG       UUAGUUCAAU   UGA AC  C   ||| |||| | ||| ||||||||       ||||||||||   ||| ||   UGA GGAG C AAA AAAUAUAC       AGUCAAGUUA   ACU UG  U AA   U    A -   C        AGCAACC          -AA   -  AU
Stem-loop sequence	ACUCCCUCCGAUUUUUUUAUAUGACACCGCUUAGUUCAAUAUAUGACACCGCUUAGUUCAAAAUUGAACUGACCAACGACAUAUAAACAAACAGAGGUAGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083719.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   |||||||||||||||||||||||| targets:1473   UCAUAUAAAAAAAUCGGAGGGAGU   1496 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0031J18 mRNA, complete cds	NA	coding protein	psRNATarget
BT069416.2	ncRNA:24   AGUAUAUUUUUUU-AGCCUCCCUCA   1   |||*|||||||||-||||||||||| targets:1121   UCAAAUAAAAAAAAUCGGAGGGAGU   1145 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0119D04 mRNA, complete cds	NA	coding protein	psRNATarget
EZ107158.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   **|||||||||||*|||||||||| targets:73   AAAUAUAAAAAAAACGGAGGGAGU   96 Target Full Sequence	1.5	TSA: Zea mays contig42816, mRNA sequence	NA	coding protein	psRNATarget
EZ082762.1	ncRNA:24   AGUAUAUUUUUU-UAGCCUCCCUCA   1   *||*||||||||-|||||||||||| targets:43   ACAAAUAAAAAAGAUCGGAGGGAGU   67 Target Full Sequence	3.0	TSA: Zea mays contig18405, mRNA sequence	NA	coding protein	psRNATarget
JB163755.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   *||*|||||||||*|||||||||| targets:69   ACAAAUAAAAAAAACGGAGGGAGU   92 Target Full Sequence	1.5	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235424.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   *||*|||||||||*|||||||||| targets:69   ACAAAUAAAAAAAACGGAGGGAGU   92 Target Full Sequence	1.5	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget
HI403294.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   *||*|||||||||*|||||||||| targets:69   ACAAAUAAAAAAAACGGAGGGAGU   92 Target Full Sequence	1.5	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
HI409615.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   *||*||||||=||*|||||||||| targets:62   ACAAAUAAAAGAAACGGAGGGAGU   85 Target Full Sequence	2.5	Sequence 7740 from Patent EP2074227	NA	coding protein	psRNATarget
JB170076.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   *||*||||||=||*|||||||||| targets:62   ACAAAUAAAAGAAACGGAGGGAGU   85 Target Full Sequence	2.5	Sequence 7740 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241745.1	ncRNA:24   AGUAUAUUUUUUUAGCCUCCCUCA   1   *||*||||||=||*|||||||||| targets:62   ACAAAUAAAAGAAACGGAGGGAGU   85 Target Full Sequence	2.5	Sequence 7740 from Patent EP2985353	NA	coding protein	psRNATarget