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BaseInfo

ncRNA ID	novel_zma_miR3425
Species	Zea mays
Class	miRNA
Genome position	Chr10:136624248-136624360 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	22
Mature sequence(if miRNA)	1 - AAAUGGAAUAAAAUAAUGGGAC - 22
Stem-loop(if miRNA)	--   UAC                 UUGCA            A         AAAC   CCC   AUUUUAUUCCAUUUUAG     AAGUUGCUAAAU UAGAAACUA    U   |||   |||||||||||||||||     |||||||||||| |||||||||    C   GGG   UAAAAUAAGGUAAAAUC     UUUAACGGUUUA AUCUUUGAU    U CA   UAA                 UAAUA            A         AUUA
Stem-loop sequence	CCCUACAUUUUAUUCCAUUUUAGUUGCAAAGUUGCUAAAUAUAGAAACUAAAACUCUAUUAUAGUUUCUAAAUUUGGCAAUUUAUAAUCUAAAAUGGAAUAAAAUAAUGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654984.2	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||||||| targets:2934   GUCCCAUCAUUUUAUUCCAUUU   2955 Target Full Sequence	1.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||||||| targets:171   GUCCCAUCAUUUUAUUCCAUUU   192 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||||||| targets:46   GUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||||||| targets:46   GUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||||||| targets:46   GUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||=|||| targets:1569   GUCCCAUCAUUUUAUUCUAUUU   1590 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403040.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||=|||| targets:32   GUCCCAUCAUUUUAUUCUAUUU   53 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||=|||| targets:32   GUCCCAUCAUUUUAUUCUAUUU   53 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
JB163501.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||||*|||||||||=|||| targets:32   GUCCCAUCAUUUUAUUCUAUUU   53 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||*|*|||||||||||||| targets:2100   GUCCCUUCAUUUUAUUCCAUUU   2121 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||*|*|||||||||||||| targets:2100   GUCCCUUCAUUUUAUUCCAUUU   2121 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
HI403052.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||*|*|||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
JB163513.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||*|*|||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||*|*|||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   |||||*|*|||||||||||||* targets:2651   GUCCCUUCAUUUUAUUCCAUUG   2672 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
XM_008662937.2	ncRNA:22   CAGGGUAAUAAAAUAAGGUAAA   1   *|=||*|||*|||||||||||| targets:2474   UUUCCUUUAAUUUAUUCCAUUU   2495 Target Full Sequence	2.5	PREDICTED: Zea mays probable galacturonosyltransferase 13 (LOC103640332), mRNA	NA	coding protein	psRNATarget