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BaseInfo

ncRNA ID	novel_zma_miR3421
Species	Zea mays
Class	miRNA
Genome position	Chr1:152994515-152994664 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	127 - GAUGAAGACUAAACGACGAGACAA - 150
Stem-loop(if miRNA)	---------------     A         AC    CAAAU   -   A    -AA   CU C UGAUUAGCAAAUGUUUAUUG                GAUGA GACUAAACG  GAGA     UCA UUA GCCU   UGA  C A                    U                ||||| |||||||||  ||||     ||| ||| ||||   |||  | |                    A                CUAUU CUGAUUUGC  UUCU     AGU AAU CGGA   AUC  U G                    G GUCUAUUUCUGAUUU     C         CA    -ACUC   U   C    CUA   -- - AUAAUAAGCAGGUACACUAC
Stem-loop sequence	GAUGAAGACUAAACGACGAGACAAAUUCAUUAAGCCUAAUGACUCCAUGAUUAGCAAAUGUUUAUUGUAGCAUCACAUGGACGAAUAAUAGUCUAAUCAGGCCUAAUUGACUCAUCUUACCGUUUAGUCCUUAUCUUUAGUCUUUAUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974108.1	ncRNA:24   AACAGAGCAGCAAAUCAGAAGUAG   1   ||||||=|||*||||||||||||| targets:383   UUGUCUUGUCUUUUAGUCUUCAUC   406 Target Full Sequence	2.0	Zea mays clone 439893 mRNA sequence	NA	coding protein	psRNATarget
EU972554.1	ncRNA:24   AACAGAGCAGCAAAUCAGAAGUAG   1   ||||*|||||*||||||||||=|| targets:121   UUGUAUCGUCUUUUAGUCUUCGUC   144 Target Full Sequence	2.5	Zea mays clone 383393 small nuclear ribonucleoprotein F mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158394.1	ncRNA:24   AACAGAGCAGCAAAUCAGAAGUAG   1   ||||*|||||*||||||||||=|| targets:121   UUGUAUCGUCUUUUAGUCUUCGUC   144 Target Full Sequence	2.5	Zea mays small nuclear ribonucleoprotein F (LOC100285502), mRNA	NA	coding protein	psRNATarget
BT065385.2	ncRNA:24   AACAGAGCAGCAAAUCAGAAGUAG   1   ||*|||=*||*||||||||||||| targets:847   UUAUCUUAUCUUUUAGUCUUCAUC   870 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132E14 mRNA, complete cds	NA	coding protein	psRNATarget