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BaseInfo

ncRNA ID	novel_zma_miR3415
Species	Zea mays
Class	miRNA
Genome position	Chr1:179805166-179805284 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	96 - UUUGAGAAAGUUGUGAGGCAGUAU - 119
Stem-loop(if miRNA)	--                G   G             CAAACC GU      -     - U   UUUGAGAAAGUUGUGA GCA UAUGUGUAGAAAC      G  CUACAU UGAAA C C   |||||||||||||||| ||| |||||||||||||      |  |||||| ||||| | U   AAGCUCUUUCAACACU UGU AUACACAUCUUUG      C  GAUGUG AUUUU G A CA                G   G             AAUUCA UG      U     A U
Stem-loop sequence	UUUGAGAAAGUUGUGAGGCAGUAUGUGUAGAAACCAAACCGGUCUACAUUGAAACUCUAUGAUUUUAUGUGUAGGUCACUUAAGUUUCUACACAUAGUGUGUCACAACUUUCUCGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647063.2	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:2088   GGACGUGCCUAACAACAUUCUCAAA   2112 Target Full Sequence	2.5	PREDICTED: Zea mays evolutionarily conserved C-terminal region 2 (umc2224), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647070.2	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:1916   GGACGUGCCUAACAACAUUCUCAAA   1940 Target Full Sequence	2.5	PREDICTED: Zea mays evolutionarily conserved C-terminal region 2 (umc2224), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001176246.1	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:1907   GGACGUGCCUAACAACAUUCUCAAA   1931 Target Full Sequence	2.5	Zea mays evolutionarily conserved C-terminal region 2 (umc2224), mRNA	NA	coding protein	psRNATarget
BT067739.1	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:1907   GGACGUGCCUAACAACAUUCUCAAA   1931 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0140O12 mRNA, complete cds	NA	coding protein	psRNATarget
BT063002.1	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:1805   GGACGUGCCUAACAACAUUCUCAAA   1829 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0015O01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018844.1	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:1545   GGACGUGCCUAACAACAUUCUCAAA   1569 Target Full Sequence	2.5	Zea mays clone EL01N0554B10.d mRNA sequence	NA	coding protein	psRNATarget
BT016816.1	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:900   GGACGUGCCUAACAACAUUCUCAAA   924 Target Full Sequence	2.5	Zea mays clone Contig649 mRNA sequence	NA	coding protein	psRNATarget
EZ110146.1	ncRNA:24   UAUG-ACGGAGUGUUGAAAGAGUUU   1   =*||-|||||*|||||*|||||||| targets:409   GGACGUGCCUAACAACAUUCUCAAA   433 Target Full Sequence	2.5	TSA: Zea mays contig45806, mRNA sequence	NA	coding protein	psRNATarget