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BaseInfo

ncRNA ID	novel_zma_miR3407
Species	Zea mays
Class	miRNA
Genome position	Chr1:36671437-36671611 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	152 - CAGACUAGCUAUCUGACUCGUCAA - 175
Stem-loop(if miRNA)	--             A      ------------     ACUA       A         A                A    AUCUA         GGCGAGUCAGAUA CUAGUU            AUUUU    UUGAAUA CCAAAAUUU GCUUGGUGAGUUAUUU GCUA     UUGGAGA   ||||||||||||| ||||||            |||||    ||||||| ||||||||| |||||||||||||||| ||||     ||||||U   CUGCUCAGUCUAU GAUCAG            UAAAA    AACUUAU GGUUUUAAA CGAACUACUCGGUAAA CGAU     AACCUCG AA             C      ACAACCUCUCAA     CAGC       C         C                C    CAAAC
Stem-loop sequence	GGCGAGUCAGAUAACUAGUUAUUUUACUAUUGAAUAACCAAAAUUUAGCUUGGUGAGUUAUUUAGCUAAUCUAUUGGAGAUGCUCCAACAAACUAGCCAAAUGGCUCAUCAAGCCAAAUUUUGGCUAUUCAACGACAAAAUAACUCUCCAACAGACUAGCUAUCUGACUCGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU966387.1	ncRNA:24   AACUGCUCAGUCUAUCGAUCAGAC   1   |||-|||||||||||||||||||| targets:1134   UUG-CGAGUCAGAUAGCUAGUCUG   1156 Target Full Sequence	0.0	Zea mays clone 294069 mRNA sequence	NA	coding protein	psRNATarget
XM_008657299.2	ncRNA:24   AACUGCUCAGUCUAUCGAUCAGAC   1   |||=|||||||||||||||*|||| targets:804   UUGGCGAGUCAGAUAGCUAAUCUG   827 Target Full Sequence	1.5	PREDICTED: Zea mays Monocopper oxidase-like protein SKU5 (LOC103634714), mRNA	NA	coding protein	psRNATarget
XM_008680041.2	ncRNA:24   AACUGCUCAGUCUAUCGAUCAGAC   1   |||-|||||=|||||||||||||| targets:278   UUG-CGAGUUAGAUAGCUAGUCUG   300 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome P450 CYP71D312 (LOC103653077), mRNA	NA	coding protein	psRNATarget
AY109644.1	ncRNA:24   AACUGCUCAGUCUAUCGAUCAGAC   1   |||=||||||||||*||||||||* targets:194   UUGGCGAGUCAGAUUGCUAGUCUN   217 Target Full Sequence	2.5	Zea mays CL12102_-1 mRNA sequence	NA	coding protein	psRNATarget
NM_001350271.1	ncRNA:24   AACUGCUCAGUCUAUCGAUCAGAC   1   ||*=|||||=|||||*|||||||| targets:1435   UUAGCGAGUUAGAUAACUAGUCUG   1458 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278902 (LOC100278902), mRNA	NA	coding protein	psRNATarget
EU947574.1	ncRNA:24   AACUGCUCAGUCUAUCGAUCAGAC   1   ***|*||||*||||||=||||||| targets:411   ACCAGGAGUGAGAUAGUUAGUCUG   434 Target Full Sequence	2.5	Zea mays clone 347641 mRNA sequence	NA	coding protein	psRNATarget