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BaseInfo

ncRNA ID	novel_zma_miR3405
Species	Zea mays
Class	miRNA
Genome position	Chr8:42485360-42485419 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647391
Length	24
Mature sequence(if miRNA)	37 - UUCCUACGGGCUACAGUCAGCCGU - 60
Stem-loop(if miRNA)	-G    -  A  C    -            C   GGCU AU GU AGCU GUAGGAAGUUAG U   |||| || || |||| ||||||||||||   CCGA UG CA UCGG CAUCCUUCAAUC A UG    C  A  -    G            G
Stem-loop sequence	GGGCUAUAGUCAGCUGUAGGAAGUUAGCUAGCUAACUUCCUACGGGCUACAGUCAGCCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY106790.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:418   GGAGUGGACCGUAGCCCGUAGGAA   441 Target Full Sequence	2.0	Zea mays PCO080599 mRNA sequence	NA	coding protein	psRNATarget
BT018787.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:1201   GGAGUGGACCGUAGCCCGUAGGAA   1224 Target Full Sequence	2.0	Zea mays clone EL01N0527G02.d mRNA sequence	NA	coding protein	psRNATarget
BT063248.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:1284   GGAGUGGACCGUAGCCCGUAGGAA   1307 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0042O21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137716.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:1339   GGAGUGGACCGUAGCCCGUAGGAA   1362 Target Full Sequence	2.0	Zea mays putative glycogen synthase kinase family protein (LOC100192496), mRNA	NA	coding protein	psRNATarget
BT034490.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:1339   GGAGUGGACCGUAGCCCGUAGGAA   1362 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0173L24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174214.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:1341   GGAGUGGACCGUAGCCCGUAGGAA   1364 Target Full Sequence	2.0	Zea mays shaggy-related protein kinase eta (LOC100381349), mRNA	NA	coding protein	psRNATarget
EU964612.1	ncRNA:24   UGCCGACUGACAUCGGGCAUCCUU   1   =**|=*|||*|||||||||||||| targets:1341   GGAGUGGACCGUAGCCCGUAGGAA   1364 Target Full Sequence	2.0	Zea mays clone 280335 shaggy-related protein kinase eta mRNA, complete cds	NA	coding protein	psRNATarget