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BaseInfo

ncRNA ID	novel_zma_miR3403
Species	Zea mays
Class	miRNA
Genome position	Chr1:247316024-247316093 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	47 - UCCGUUUUUUUAGUUGUCGCUGGA - 70
Stem-loop(if miRNA)	--        --                    UCAA   UCCGUUUU  UUUAGUUGUCGCUGGAUAGU    U   ||||||||  ||||||||||||||||||||   AGGCAAAG  AAAUCAACAGCGACCUAUCA    U GG        CA                    CAUU
Stem-loop sequence	UCCGUUUUUUUAGUUGUCGCUGGAUAGUUCAAUUUUACACUAUCCAGCGACAACUAAAACGAAACGGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167730.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   |||||||||||||||||||||||| targets:57   UCCAGCGACAACUAAAAAAACGGA   80 Target Full Sequence	0.0	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239399.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   |||||||||||||||||||||||| targets:57   UCCAGCGACAACUAAAAAAACGGA   80 Target Full Sequence	0.0	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
HI407269.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   |||||||||||||||||||||||| targets:57   UCCAGCGACAACUAAAAAAACGGA   80 Target Full Sequence	0.0	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020549872.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   |||||||||||||||||||||||| targets:1316   UCCAGCGACAACUAAAAAAACGGA   1339 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175582.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   |||||||||||||||||||||||| targets:1483   UCCAGCGACAACUAAAAAAACGGA   1506 Target Full Sequence	0.0	Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA	NA	coding protein	psRNATarget
BT065656.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   |||||||||||||||||||||||| targets:1483   UCCAGCGACAACUAAAAAAACGGA   1506 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds	NA	coding protein	psRNATarget
LQ239341.1	ncRNA:24   AGGUCGCUGUUGA-UUUUUUUGCCU   1   |||||||||||||-||||||||||| targets:57   UCCAGCGACAACUUAAAAAAACGGA   81 Target Full Sequence	3.0	Sequence 5336 from Patent EP2985353	NA	coding protein	psRNATarget
JB167672.1	ncRNA:24   AGGUCGCUGUUGA-UUUUUUUGCCU   1   |||||||||||||-||||||||||| targets:57   UCCAGCGACAACUUAAAAAAACGGA   81 Target Full Sequence	3.0	Sequence 5336 from Patent EP2559767	NA	coding protein	psRNATarget
HI407211.1	ncRNA:24   AGGUCGCUGUUGA-UUUUUUUGCCU   1   |||||||||||||-||||||||||| targets:57   UCCAGCGACAACUUAAAAAAACGGA   81 Target Full Sequence	3.0	Sequence 5336 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008669416.2	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   ||||||||=||*|||||||||||| targets:540   UCCAGCGAUAAAUAAAAAAACGGA   563 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001352327.1	ncRNA:24   AGGUCGCUGUUGAUUUUUUUGCCU   1   ||||||*||||||||||||||*|| targets:2720   UCCAGCAACAACUAAAAAAACAGA   2743 Target Full Sequence	2.5	Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA	NA	coding protein	psRNATarget