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BaseInfo

ncRNA ID novel_zma_miR3399
Species Zea mays
Class miRNA
Genome position Chr1:303772028-303772112 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 21
Mature sequence(if miRNA) 1 - AGCCAGGGAUGAUUUGCCUGU - 21
Stem-loop(if miRNA) --   C                   UUCCU    UU  CA   CAA
  AGC AGGGAUGAUUUGCCUGUGG     GUCG  GC  UGC   U
  ||| |||||||||||||||||||     ||||  ||  |||
  UCG UCCCUACUAAACGGGCAUC     UAGC  UG  AUG   G
CA   -                   -----    -U  UC   UCC
Stem-loop sequence AGCCAGGGAUGAUUUGCCUGUGGUUCCUGUCGUUGCCAUGCCAAUGCCUGUACUGUUCGAUCUACGGGCAAAUCAUCCCUGCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163760.1
ncRNA:21   UGUCCGUUUAGUAGGGACCGA   1
  |||||||||||||||||||||
targets:74   ACAGGCAAAUCAUCCCUGGCU   94

0.0 Sequence 1424 from Patent EP2559767 NA coding protein psRNATarget
LQ235429.1
ncRNA:21   UGUCCGUUUAGUAGGGACCGA   1
  |||||||||||||||||||||
targets:74   ACAGGCAAAUCAUCCCUGGCU   94

0.0 Sequence 1424 from Patent EP2985353 NA coding protein psRNATarget
HI403299.1
ncRNA:21   UGUCCGUUUAGUAGGGACCGA   1
  |||||||||||||||||||||
targets:74   ACAGGCAAAUCAUCCCUGGCU   94

0.0 Sequence 1424 from Patent EP2074227 NA coding protein psRNATarget