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BaseInfo

ncRNA ID	novel_zma_miR3397
Species	Zea mays
Class	miRNA
Genome position	Chr1:284475414-284475466 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	30 - AGUUUAAAAUUUGUUGGAUUAUAU - 53
Stem-loop(if miRNA)	--                       A   AUAAUCCAAUAAAUUUUGAACUA G   ||||||||||||||||||||||| U   UAUUAGGUUGUUUAAAAUUUGAU G UA                       U
Stem-loop sequence	AUAAUCCAAUAAAUUUUGAACUAAGUGUUAGUUUAAAAUUUGUUGGAUUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008657785.2	ncRNA:24   UAUAUUAGGUUGUUUAAAAUUUGA   1   |||||||||||=|||||||||||| targets:2296   AUAUAAUCCAAUAAAUUUUAAACU   2319 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
XM_020547943.1	ncRNA:24   UAUAUUAGGUUGUUUAAAAUUUGA   1   ||||||||||||||*||||||||| targets:3368   AUAUAAUCCAACAACUUUUAAACU   3391 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:24   UAUAUUAGGUUGUUUAAAAUUUGA   1   ||||||||||||||*||||||||| targets:3353   AUAUAAUCCAACAACUUUUAAACU   3376 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:24   UAUAUUAGGUUGUUUAAAAUUUGA   1   ||||||||||||||*||||||||| targets:3224   AUAUAAUCCAACAACUUUUAAACU   3247 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:24   UAUAUUAGGUUGUUUAAAAUUUGA   1   ||||||||||||||*||||||||| targets:1239   AUAUAAUCCAACAACUUUUAAACU   1262 Target Full Sequence	1.5	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:24   UAUAUUAGGUUGUUUAAAAUUUGA   1   ||||||||||||||*||||||||| targets:1239   AUAUAAUCCAACAACUUUUAAACU   1262 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget