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BaseInfo

ncRNA ID	novel_zma_miR3396
Species	Zea mays
Class	miRNA
Genome position	Chr1:24119556-24119662 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - GAGGUGGAUUUUGACUAGUUGUGG - 24
Stem-loop(if miRNA)	--                                                      GAGGUGGAUUUUGACUAGUUGUGGAUUUAUUCCCCCUCAAUCCACAUAUCCA   |||||||||||||||||||||||||||||||||||||||||||||||||||G   CUCCACCUAAAACUGAUCAACACCUAAAUAAGGGGGAGUUAGGUGUAUAGGU AA
Stem-loop sequence	GAGGUGGAUUUUGACUAGUUGUGGAUUUAUUCCCCCUCAAUCCACAUAUCCAGUGGAUAUGUGGAUUGAGGGGGAAUAAAUCCACAACUAGUCAAAAUCCACCUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240934.1	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:40   CCAUAACAAGUCAAAAUCCACCCC   63 Target Full Sequence	2.5	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
HI408804.1	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:40   CCAUAACAAGUCAAAAUCCACCCC   63 Target Full Sequence	2.5	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
JB169265.1	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:40   CCAUAACAAGUCAAAAUCCACCCC   63 Target Full Sequence	2.5	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:120   CCAUAACAAGUCAAAAUCCACCCC   143 Target Full Sequence	2.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:1218   CCAUAACAAGUCAAAAUCCACCCC   1241 Target Full Sequence	2.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:1218   CCAUAACAAGUCAAAAUCCACCCC   1241 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   |||=|||*||||||||||||||*| targets:2330   CCAUAACAAGUCAAAAUCCACCCC   2353 Target Full Sequence	2.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545388.1	ncRNA:24   GGU--GUUGAUCAGUUUUAGGUGGAG   1   =||--||=||=*|||||||||||||| targets:683   UCAUUCAGCUGUUCAAAAUCCACCUC   708 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642519 (LOC103642519), mRNA	NA	coding protein	psRNATarget
XM_008671131.2	ncRNA:24   GGU--GUUGAUCAGUUUUAGGUGGAG   1   =||--||=||=*|||||||||||||| targets:704   UCAUUCAGCUGUUCAAAAUCCACCUC   729 Target Full Sequence	3.0	PREDICTED: Zea mays zinc finger protein CONSTANS-LIKE 1 (LOC103646403), mRNA	NA	coding protein	psRNATarget
BT063868.1	ncRNA:24   GGU--GUUGAUCAGUUUUAGGUGGAG   1   =||--||=||=*|||||||||||||| targets:916   UCAUUCAGCUGUUCAAAAUCCACCUC   941 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0114D17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175062.1	ncRNA:24   GGU--GUUGAUCAGUUUUAGGUGGAG   1   =||--||=||=*|||||||||||||| targets:916   UCAUUCAGCUGUUCAAAAUCCACCUC   941 Target Full Sequence	3.0	Zea mays CCT motif family protein (LOC100382313), mRNA	NA	coding protein	psRNATarget
XM_020539081.1	ncRNA:24   GGU--GUUGAUCAGUUUUAGGUGGAG   1   =||--||=||=*|||||||||||||| targets:1179   UCAUUCAGCUGUUCAAAAUCCACCUC   1204 Target Full Sequence	3.0	PREDICTED: Zea mays CCT motif family protein (LOC100382313), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064026.2	ncRNA:24   GGUGUUGAUCAGUUUUAGGUGGAG   1   =*||=|=||**||||||||||||| targets:1756   UGACGAUUAAGCAAAAUCCACCUC   1779 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0132J21 mRNA, complete cds	NA	coding protein	psRNATarget