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BaseInfo

ncRNA ID	novel_zma_miR3385
Species	Zea mays
Class	miRNA
Genome position	Chr9:107559292-107559397 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089705
Length	24
Mature sequence(if miRNA)	83 - AAUCCCCUCCGGUAUUUGGACUCC - 106
Stem-loop(if miRNA)	---AG   C  A         A         A            C U      A      CCA AA ACCGGAGGG AUUGGAGGG CUAAAAUCCUCU C UAUUCA A      ||| || ||||||||| ||||||||| |||||||||||| | ||||||      GGU UU UGGCCUCCC UAACCUCCC GAUUUUAGGGGA G AUAAGU G CCUCA   -  A         C         C            A U      U
Stem-loop sequence	AGCCACAAAACCGGAGGGAAUUGGAGGGACUAAAAUCCUCUCCUUAUUCAAAGUUGAAUAUGAAGGGGAUUUUAGCCCCUCCAAUCCCCUCCGGUAUUUGGACUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:24   CCUCAGGUUUAUGGCCUCCCCUAA   1   ||||*=*||||||||||||||||| targets:3429   GGAGCUAAAAUACCGGAGGGGAUU   3452 Target Full Sequence	2.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   CCUCAGGUUUAUGGCCUCCCCUAA   1   ||||*=*||||||||||||||||| targets:3464   GGAGCUAAAAUACCGGAGGGGAUU   3487 Target Full Sequence	2.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:24   CCUCAGGUUUAUGGCCUCCCCUAA   1   *|||||||||*|||||||*||||| targets:2090   AGAGUCCAAAAACCGGAGAGGAUU   2113 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   CCUCAGGUUUAUGGCCUCCCCUAA   1   **=|||=||||||||*|||||||| targets:957   CAGGUCUAAAUACCGAAGGGGAUU   980 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget