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BaseInfo

ncRNA ID novel_zma_miR3379
Species Zea mays
Class miRNA
Genome position Chr9:48772941-48773040 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 1 - AAUGUUAUUUACACUGGCGGGCUG - 24
Stem-loop(if miRNA) --     U    A   U           A    AA      A   AU   
  AAUGU AUUU CAC GGCGGGCUGCU AAGA  ACCGCC GUG  AAUA
  ||||| |||| ||| ||||||||||| ||||  |||||| |||  |||A
  UUGUA UAAA GUG CCGCCCGACGA UUCU  UGGCGG CAC  UUGU
CU     C    A   U           A    -G      A   CU   
Stem-loop sequence AAUGUUAUUUACACUGGCGGGCUGCUAAAGAAAACCGCCAGUGAUAAUAAUGUUUCCACAGGCGGUGUCUUAAGCAGCCCGCCUGUGAAAAUCAUGUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ107356.1
ncRNA:24   GUCGGGCGGUCACAUUUAUUGUAA   1
  ||--|=|=|||||||||||||||*
targets:73   CA--CUGUCAGUGUAAAUAACAUC   94

3.0 TSA: Zea mays contig43014, mRNA sequence NA coding protein psRNATarget