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BaseInfo

ncRNA ID novel_zma_miR3373
Species Zea mays
Class miRNA
Genome position Chr1:210158343-210158394 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 29 - GUCCACGGUCCGGACUGUCCGCGG - 52
Stem-loop(if miRNA) --             -  C  A U  G
  GCGGACGGUCCGG CC UG G CC G
  ||||||||||||| || || | ||
  CGCCUGUCAGGCC GG AC C GG A
GG             U  C  - U  C
Stem-loop sequence GCGGACGGUCCGGCCCUGAGUCCGGACGGUCCACGGUCCGGACUGUCCGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059430.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:47   GCGCGGACCGUCCGGACCGCGGAC   70

2.5 TSA: Zea mays contig60552, mRNA sequence NA coding protein psRNATarget
EU940813.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:60   GCGCGGACCGUCCGGACCGCGGAC   83

2.5 Zea mays clone 1145688 mRNA sequence NA coding protein psRNATarget