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BaseInfo

ncRNA ID novel_zma_miR3371
Species Zea mays
Class miRNA
Genome position Chr9:70138702-70138796 [-]
Reference genome RefGen_v4
Source SRR2089715;SRR2089701
Length 24
Mature sequence(if miRNA) 1 - GGCAAAGUGUGGCAAGUUAGACAG - 24
Stem-loop(if miRNA) --GG      AC               -------------       G G   G
    CUAACU  GCCACACUUUGCCUA             AGGUUAG U UUC A
    ||||||  |||||||||||||||             ||||||| | ||| A
    GAUUGA  CGGUGUGAAACGGAU             UCCAAUC A AAG U
GACA      -A               UGAAAAGACGGAU       A G   U
Stem-loop sequence GGCUAACUACGCCACACUUUGCCUAAGGUUAGGUGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGACAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT083952.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *|||||||||||||||||||||||
targets:1483   GUGUCUAACUUGCCACACUUUGCC   1506

0.0 Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *|||||||||||||||||||||=|
targets:3007   AUGUCUAACUUGCCACACUUUGUC   3030

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:3066   UUGUGGCUAAAUGUGCCACACUUUGCC   3092

3.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *|||||||||||||||||||||=|
targets:3135   AUGUCUAACUUGCCACACUUUGUC   3158

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:3194   UUGUGGCUAAAUGUGCCACACUUUGCC   3220

3.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *|||||||||||||||||||||=|
targets:3142   AUGUCUAACUUGCCACACUUUGUC   3165

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:3201   UUGUGGCUAAAUGUGCCACACUUUGCC   3227

3.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
HI403392.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||||||||||||||||||
targets:18   CUGCCUAACUUGCCACACUUUGCC   41

0.0 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
LQ235522.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||||||||||||||||||
targets:18   CUGCCUAACUUGCCACACUUUGCC   41

0.0 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
JB163853.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||||||||||||||||||
targets:18   CUGCCUAACUUGCCACACUUUGCC   41

0.0 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
LQ235416.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||||||=|||||||||||
targets:18   CUGCCUAACUUGUCACACUUUGCC   41

1.5 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
HI403286.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||||||=|||||||||||
targets:18   CUGCCUAACUUGUCACACUUUGCC   41

1.5 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
JB163747.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||||||=|||||||||||
targets:18   CUGCCUAACUUGUCACACUUUGCC   41

1.5 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
JB163753.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*=|||||||||||||||||||
targets:18   CUGCUUAACUUGCCACACUUUGCC   41

0.0 Sequence 1417 from Patent EP2559767 NA coding protein psRNATarget
HI403292.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*=|||||||||||||||||||
targets:18   CUGCUUAACUUGCCACACUUUGCC   41

0.0 Sequence 1417 from Patent EP2074227 NA coding protein psRNATarget
LQ235422.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*=|||||||||||||||||||
targets:18   CUGCUUAACUUGCCACACUUUGCC   41

0.0 Sequence 1417 from Patent EP2985353 NA coding protein psRNATarget
XM_020540795.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*|||||||||||||=||||||
targets:692   CUGCCUAACUUGCCACAUUUUGCC   715

1.5 PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA NA coding protein psRNATarget
BT033837.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:930   AUGCCUAACUUGCCACACUUUGCC   953

0.0 Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds NA coding protein psRNATarget
NM_001137099.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:1418   AUGCCUAACUUGCCACACUUUGCC   1441

0.0 Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA NA coding protein psRNATarget
AY109437.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:1428   AUGCCUAACUUGCCACACUUUGCC   1451

0.0 Zea mays CL903_-1 mRNA sequence NA coding protein psRNATarget
BT018862.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:1048   GUGCCUAACUUGCCACACUUUGCC   1071

0.0 Zea mays clone EL01N0559E06.d mRNA sequence NA coding protein psRNATarget
XM_008660313.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:709   AUGGCUAACUUGCCACACUUUGCC   732

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660311.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:709   AUGGCUAACUUGCCACACUUUGCC   732

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660309.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:709   AUGGCUAACUUGCCACACUUUGCC   732

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670840.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||||||||||||||||||
targets:2674   AUGGCUAACUUGCCACACUUUGCC   2697

0.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA NA coding protein psRNATarget
EZ061854.1
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||||-||||||||||||||
targets:48   UUGUGGCUAACUGUGCCACACUUUGCC   74

2.0 TSA: Zea mays contig62976, mRNA sequence NA coding protein psRNATarget
EU968686.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*|||||||||||||||||*||
targets:622   CUGCCUAACUUGCCACACUUUACC   645

1.5 Zea mays clone 323451 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065161.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*|||||||||||||||||*||
targets:605   CUGCCUAACUUGCCACACUUUACC   628

1.5 Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds NA coding protein psRNATarget
XM_020550436.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*|||||||||||||||||*||
targets:640   CUGCCUAACUUGCCACACUUUACC   663

1.5 PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA NA coding protein psRNATarget
HI403439.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1564 from Patent EP2074227 NA coding protein psRNATarget
LQ235569.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1564 from Patent EP2985353 NA coding protein psRNATarget
JB163900.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1564 from Patent EP2559767 NA coding protein psRNATarget
JB163819.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1483 from Patent EP2559767 NA coding protein psRNATarget
HI403257.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1382 from Patent EP2074227 NA coding protein psRNATarget
JB163720.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1384 from Patent EP2559767 NA coding protein psRNATarget
LQ235388.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1383 from Patent EP2985353 NA coding protein psRNATarget
HI403297.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1422 from Patent EP2074227 NA coding protein psRNATarget
JB163656.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1320 from Patent EP2559767 NA coding protein psRNATarget
JB163718.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1382 from Patent EP2559767 NA coding protein psRNATarget
JB163716.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1380 from Patent EP2559767 NA coding protein psRNATarget
JB163717.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1381 from Patent EP2559767 NA coding protein psRNATarget
JB163721.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1385 from Patent EP2559767 NA coding protein psRNATarget
HI403256.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1381 from Patent EP2074227 NA coding protein psRNATarget
LQ235387.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1382 from Patent EP2985353 NA coding protein psRNATarget
HI403195.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1320 from Patent EP2074227 NA coding protein psRNATarget
HI403260.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1385 from Patent EP2074227 NA coding protein psRNATarget
LQ235427.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1422 from Patent EP2985353 NA coding protein psRNATarget
HI403425.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1550 from Patent EP2074227 NA coding protein psRNATarget
LQ235386.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1381 from Patent EP2985353 NA coding protein psRNATarget
HI403358.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1483 from Patent EP2074227 NA coding protein psRNATarget
LQ235325.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1320 from Patent EP2985353 NA coding protein psRNATarget
LQ235390.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1385 from Patent EP2985353 NA coding protein psRNATarget
HI403259.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1384 from Patent EP2074227 NA coding protein psRNATarget
HI403258.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1383 from Patent EP2074227 NA coding protein psRNATarget
LQ235555.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1550 from Patent EP2985353 NA coding protein psRNATarget
LQ235389.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1384 from Patent EP2985353 NA coding protein psRNATarget
JB163719.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1383 from Patent EP2559767 NA coding protein psRNATarget
JB163758.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1422 from Patent EP2559767 NA coding protein psRNATarget
LQ235385.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1380 from Patent EP2985353 NA coding protein psRNATarget
HI403255.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1380 from Patent EP2074227 NA coding protein psRNATarget
JB163886.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1550 from Patent EP2559767 NA coding protein psRNATarget
LQ235488.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:17   GUGGCUAACUGUGCCACACUUUGCC   41

2.0 Sequence 1483 from Patent EP2985353 NA coding protein psRNATarget
EZ517203.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||||-||||||||||||||
targets:98   GUGGCUAACUAUGCCACACUUUGCC   122

2.0 TSA: Zea mays cultivar W22 CL614Contig1.betc, mRNA sequence NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  ||**||||||||=|||||||||||
targets:932   CUACCUAACUUGUCACACUUUGCC   955

1.5 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
EU958119.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  ||**||||||||=|||||||||||
targets:932   CUACCUAACUUGUCACACUUUGCC   955

1.5 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY109434.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  *||*||||*|||||||||||||||
targets:398   AUGCCUAAGUUGCCACACUUUGCC   421

1.0 Zea mays CL2997_-2 mRNA sequence NA coding protein psRNATarget
EZ066409.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||||*||||||||||||*||
targets:6   CUGCCUAAGUUGCCACACUUUACC   29

2.5 TSA: Zea mays contig02043, mRNA sequence NA coding protein psRNATarget
DQ244265.1
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:719   UUGUGGCUAAAUGUGCCACACUUUGCC   745

3.0 Zea mays clone 4014 mRNA sequence NA coding protein psRNATarget
EU945170.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||*|*|||||||||||||||
targets:854   CUGCCUCAGUUGCCACACUUUGCC   877

2.0 Zea mays clone 243250 mRNA sequence NA coding protein psRNATarget
EU972213.1
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:1275   UUGUGGCUAAAUGUGCCACACUUUGCC   1301

3.0 Zea mays clone 377527 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU966347.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |||*||*|*|||||||||||||||
targets:1338   CUGCCUCAGUUGCCACACUUUGCC   1361

2.0 Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds NA coding protein psRNATarget
XM_008683326.2
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:2139   UUGUGGCUAAAUGUGCCACACUUUGCC   2165

3.0 PREDICTED: Zea mays DUF1336 domain containing protein expressed (LOC100274268), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667123.2
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:42   UUGUGACUAAAUGUGCCACACUUUGCC   68

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667124.2
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:42   UUGUGACUAAAUGUGCCACACUUUGCC   68

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008681572.2
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  |*|*|||||||*||||||||||||
targets:2402   CAGCCUAACUUACCACACUUUGCC   2425

1.5 PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA NA coding protein psRNATarget
XM_020541969.1
ncRNA:24   GACA--GAUU-GAACGGUGUGAAACGG   1
  =|||--||||-|*||||||||||||||
targets:1165   UUGUGGCUAAACCUGCCACACUUUGCC   1191

3.0 PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546911.1
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:42   UUGUGACUAAAUGUGCCACACUUUGCC   68

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667122.2
ncRNA:24   GACA--GAUUGA-ACGGUGUGAAACGG   1
  =|||--||||*|-||||||||||||||
targets:42   UUGUGACUAAAUGUGCCACACUUUGCC   68

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X1, mRNA NA coding protein psRNATarget
BT065116.1
ncRNA:24   GACAGAUUGAACGGUGUGAAACGG   1
  =*|*||*|||||||||||||||||
targets:979   UAGCCUCACUUGCCACACUUUGCC   1002

1.0 Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds NA coding protein psRNATarget
LQ238827.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *|*|||||*|-||||||||||||||
targets:6   GUAUCUAAAUGUGCCACACUUUGCC   30

3.0 Sequence 4822 from Patent EP2985353 NA coding protein psRNATarget
HI406697.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *|*|||||*|-||||||||||||||
targets:6   GUAUCUAAAUGUGCCACACUUUGCC   30

3.0 Sequence 4822 from Patent EP2074227 NA coding protein psRNATarget
JB167158.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *|*|||||*|-||||||||||||||
targets:6   GUAUCUAAAUGUGCCACACUUUGCC   30

3.0 Sequence 4822 from Patent EP2559767 NA coding protein psRNATarget
EU945747.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:105   AUGGCUAAAUGUGCCACACUUUGCC   129

3.0 Zea mays clone 284493 mRNA sequence NA coding protein psRNATarget
EU967316.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:495   GUGGCUAAAUGUGCCACACUUUGCC   519

3.0 Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds NA coding protein psRNATarget
NM_001177034.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *|*|||||*|-||||||||||||||
targets:536   GUAUCUAAAUGUGCCACACUUUGCC   560

3.0 Zea mays putative LRR receptor-like serine/threonine-protein kinase (LOC100384510), mRNA NA coding protein psRNATarget
BT083538.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *|*|||||*|-||||||||||||||
targets:536   GUAUCUAAAUGUGCCACACUUUGCC   560

3.0 Zea mays full-length cDNA clone ZM_BFb0009D08 mRNA, complete cds NA coding protein psRNATarget
EU974082.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:1091   AUGGCUAAAUGUGCCACACUUUGCC   1115

3.0 Zea mays clone 439268 mRNA sequence NA coding protein psRNATarget
BT037664.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:1244   GUGGCUAAAUAUGCCACACUUUGCC   1268

3.0 Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds NA coding protein psRNATarget
NM_001156027.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:1586   AUGGCUAAAUGUGCCACACUUUGCC   1610

3.0 Zea mays uncharacterized LOC100283125 (pco080956), mRNA NA coding protein psRNATarget
EU963506.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:1586   AUGGCUAAAUGUGCCACACUUUGCC   1610

3.0 Zea mays clone 263419 COP9 signalosome complex subunit 3 mRNA, complete cds NA coding protein psRNATarget
NM_001154039.2
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:1991   GUGGCUAAAUAUGCCACACUUUGCC   2015

3.0 Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA NA coding protein psRNATarget
EU955653.1
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:1992   GUGGCUAAAUAUGCCACACUUUGCC   2016

3.0 Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds NA coding protein psRNATarget
XM_008662146.2
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *||*||||*|-||||||||||||||
targets:2644   AUGGCUAAAUGUGCCACACUUUGCC   2668

3.0 PREDICTED: Zea mays transcription factor bHLH74 (LOC103639394), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645942.2
ncRNA:24   GACAGAUUGA-ACGGUGUGAAACGG   1
  *|*|||||*|-||||||||||||||
targets:3174   GUAUCUAAAUGUGCCACACUUUGCC   3198

3.0 PREDICTED: Zea mays putative LRR receptor-like serine/threonine-protein kinase (LOC100384510), transcript variant X1, mRNA NA coding protein psRNATarget
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