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BaseInfo

ncRNA ID novel_zma_miR3369
Species Zea mays
Class miRNA
Genome position Chr9:86951792-86951881 [-]
Reference genome RefGen_v4
Source SRR2089715;SRR1997865
Length 24
Mature sequence(if miRNA) 67 - ACUUGUCGAGUGAUUAUGUGCAUU - 90
Stem-loop(if miRNA) --    G      G    U  G       AG        AAG    
  ACUU UCGAGU AUUA GU CAUUUAU  GGUUGUCC   GUCCG
  |||| |||||| |||| || |||||||  ||||||||   ||||U
  UGGA GGUUCA UAAU CG GUGGAUG  UCAACAGG   CAGGG
CU    G      G    C  G       --        -AA    
Stem-loop sequence ACUUGUCGAGUGAUUAUGUGCAUUUAUAGGGUUGUCCAAGGUCCGUGGGACAAGGACAACUGUAGGUGGGCCUAAUGACUUGGGAGGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106947.1
ncRNA:24   UUACGUGUAUUAGUGAGCUGUUCA   1
  ||||||||||||||||=|||||||
targets:217   AAUGCACAUAAUCACUUGACAAGU   240

1.5 TSA: Zea mays contig42605, mRNA sequence NA coding protein psRNATarget
EU943317.1
ncRNA:24   UUACGUGUAUUAGUGAGCUGUUCA   1
  =||||||||||||||||||=||||
targets:866   GAUGCACAUAAUCACUCGAUAAGU   889

1.5 Zea mays clone 1597341 mRNA sequence NA coding protein psRNATarget