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BaseInfo

ncRNA ID	novel_zma_miR3368
Species	Zea mays
Class	miRNA
Genome position	Chr9:92349472-92349551 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - CAACUAAAACGAAACGGAGGGAAU - 24
Stem-loop(if miRNA)	--                                     A   UCCCUCCGUUUCGUUUUAGUUGUCGCUGGAUAGUGCA A   |||||||||||||||||||||||||||||||||||||   AGGGAGGCAAAGCAAAAUCAACAGCGACCUGUCACGU A UA                                     U
Stem-loop sequence	UCCCUCCGUUUCGUUUUAGUUGUCGCUGGAUAGUGCAAAAUUGCACUGUCCAGCGACAACUAAAACGAAACGGAGGGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167785.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:5   AUACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:5   AUACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:5   AUACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:5   AUACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:5   AUACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:5   AUACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:570   AUACUCCCUCCGUUUCGUUUUAGUUG   595 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:1023   AUACUCCCUCCGUUUCGUUUUAGUUG   1048 Target Full Sequence	0.0	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:911   AUACUCCCUCCGUUUCGUUUUAGUUG   936 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:1514   AUACUCCCUCCGUUUCGUUUUAGUUG   1539 Target Full Sequence	0.0	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||||||||||||||||||||| targets:1514   AUACUCCCUCCGUUUCGUUUUAGUUG   1539 Target Full Sequence	0.0	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
LQ241364.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:4   ACUCCCUCCGUUUCGUUUUAGUUG   27 Target Full Sequence	0.0	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
HI409234.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:4   ACUCCCUCCGUUUCGUUUUAGUUG   27 Target Full Sequence	0.0	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
JB169695.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:4   ACUCCCUCCGUUUCGUUUUAGUUG   27 Target Full Sequence	0.0	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
HI407269.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
JB167730.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239399.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
JB167672.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5336 from Patent EP2559767	NA	coding protein	psRNATarget
HI407211.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5336 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239341.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5336 from Patent EP2985353	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:7   ACUCCCUCCGUUUCGUUUUAGUUG   30 Target Full Sequence	0.0	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:836   ACUCCCUCCGUUUCGUUUUAGUUG   859 Target Full Sequence	0.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:836   ACUCCCUCCGUUUCGUUUUAGUUG   859 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:1163   ACUCCCUCCGUUUCGUUUUAGUUG   1186 Target Full Sequence	0.0	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549872.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:1266   ACUCCCUCCGUUUCGUUUUAGUUG   1289 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065656.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:1433   ACUCCCUCCGUUUCGUUUUAGUUG   1456 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175582.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||||||||||||||||||| targets:1433   ACUCCCUCCGUUUCGUUUUAGUUG   1456 Target Full Sequence	0.0	Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA	NA	coding protein	psRNATarget
EZ065373.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--|||=|||||||||||||||||| targets:277   AUACUCCUUCCGUUUCGUUUUAGUUG   302 Target Full Sequence	1.0	TSA: Zea mays contig01006, mRNA sequence	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||=||||||||||||||| targets:2527   AUACUCCCUCUGUUUCGUUUUAGUUG   2552 Target Full Sequence	1.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB170512.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||=|||||||||||||||| targets:2   ACUCCCUUCGUUUCGUUUUAGUUG   25 Target Full Sequence	1.0	Sequence 8176 from Patent EP2559767	NA	coding protein	psRNATarget
HI410051.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||=|||||||||||||||| targets:2   ACUCCCUUCGUUUCGUUUUAGUUG   25 Target Full Sequence	1.0	Sequence 8176 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242181.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||||=|||||||||||||||| targets:2   ACUCCCUUCGUUUCGUUUUAGUUG   25 Target Full Sequence	1.0	Sequence 8176 from Patent EP2985353	NA	coding protein	psRNATarget
EU945792.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|=|||||||||||||||||||| targets:1179   ACUUCCUCCGUUUCGUUUUAGUUG   1202 Target Full Sequence	0.0	Zea mays clone 285684 mRNA sequence	NA	coding protein	psRNATarget
EU964554.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|=|||||||||||||||||||| targets:1328   ACUUCCUCCGUUUCGUUUUAGUUG   1351 Target Full Sequence	0.0	Zea mays clone 279840 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||=||||||||||||||||||| targets:2114   ACUCUCUCCGUUUCGUUUUAGUUG   2137 Target Full Sequence	0.0	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||=||||||||||||||||||| targets:2114   ACUCUCUCCGUUUCGUUUUAGUUG   2137 Target Full Sequence	0.0	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|=|=|||||||||||||||||| targets:1334   ACUUCUUCCGUUUCGUUUUAGUUG   1357 Target Full Sequence	1.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:10   AUACUCCCUCCGUUUCUUUUUAGUUG   35 Target Full Sequence	1.5	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:10   AUACUCCCUCCGUUUCUUUUUAGUUG   35 Target Full Sequence	1.5	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:10   AUACUCCCUCCGUUUCUUUUUAGUUG   35 Target Full Sequence	1.5	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:10   AUACUCCCUCCGUUUCUUUUUAGUUG   35 Target Full Sequence	1.5	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:10   AUACUCCCUCCGUUUCUUUUUAGUUG   35 Target Full Sequence	1.5	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:10   AUACUCCCUCCGUUUCUUUUUAGUUG   35 Target Full Sequence	1.5	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:1150   AUACUCCCUCCGUUUCUUUUUAGUUG   1175 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2204   AUACUCCCUCCGUUUCUUUUUAGUUG   2229 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2204   AUACUCCCUCCGUUUCUUUUUAGUUG   2229 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2204   AUACUCCCUCCGUUUCUUUUUAGUUG   2229 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2225   AUACUCCCUCCGUUUCUUUUUAGUUG   2250 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2225   AUACUCCCUCCGUUUCUUUUUAGUUG   2250 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2225   AUACUCCCUCCGUUUCUUUUUAGUUG   2250 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2204   AUACUCCCUCCGUUUCUUUUUAGUUG   2229 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2163   AUACUCCCUCCGUUUCUUUUUAGUUG   2188 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2218   AUACUCCCUCCGUUUCUUUUUAGUUG   2243 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2243   AUACUCCCUCCGUUUCUUUUUAGUUG   2268 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2204   AUACUCCCUCCGUUUCUUUUUAGUUG   2229 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   UA--AGGGAGGCAAAGCAAAAUCAAC   1   ||--||||||||||||*||||||||| targets:2142   AUACUCCCUCCGUUUCUUUUUAGUUG   2167 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
JB167731.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:7   ACUCCCUCCGUUUCUUUUUAGUUG   30 Target Full Sequence	1.5	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:7   ACUCCCUCCGUUUCUUUUUAGUUG   30 Target Full Sequence	1.5	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
HI407270.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:7   ACUCCCUCCGUUUCUUUUUAGUUG   30 Target Full Sequence	1.5	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
EZ112557.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:49   ACUCCCUCCGUUUCUUUUUAGUUG   72 Target Full Sequence	1.5	TSA: Zea mays contig48218, mRNA sequence	NA	coding protein	psRNATarget
EU957761.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |||==*|||||||=|||||||||| targets:293   AUUUUAUCCGUUUUGUUUUAGUUG   316 Target Full Sequence	2.5	Zea mays clone 1614826 mRNA sequence	NA	coding protein	psRNATarget
BT062074.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1138   ACUCCCUCCGUUUCUUUUUAGUUG   1161 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
EU953599.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1226   ACUCCCUCCGUUUCUUUUUAGUUG   1249 Target Full Sequence	1.5	Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1221   ACUCCCUCCGUUUCUUUUUAGUUG   1244 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1236   ACUCCCUCCGUUUCUUUUUAGUUG   1259 Target Full Sequence	1.5	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1250   ACUCCCUCCGUUUCUUUUUAGUUG   1273 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1302   ACUCCCUCCGUUUCUUUUUAGUUG   1325 Target Full Sequence	1.5	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
EU973763.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1304   ACUCCCUCCGUUUCUUUUUAGUUG   1327 Target Full Sequence	1.5	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1410   ACUCCCUCCGUUUCUUUUUAGUUG   1433 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1999   ACUCCCUCCGUUUCUUUUUAGUUG   2022 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:2030   ACUCCCUCCGUUUCUUUUUAGUUG   2053 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008677351.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:2058   ACUCCCUCCGUUUCUUUUUAGUUG   2081 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:2112   ACUCCCUCCGUUUCUUUUUAGUUG   2135 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:2143   ACUCCCUCCGUUUCUUUUUAGUUG   2166 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||||||||||||*||||||||| targets:1453   ACUCCCUCCGUUUCUUUUUAGUUG   1476 Target Full Sequence	1.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|||*|||||||=|||||||||| targets:308   ACUCCAUCCGUUUUGUUUUAGUUG   331 Target Full Sequence	2.5	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
JB170144.1	ncRNA:20   GGAGGCAAAGCAAAAUCAAC   1   |||||||||=|||||||||| targets:1   CCUCCGUUUUGUUUUAGUUG   20 Target Full Sequence	1.5	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
HI409683.1	ncRNA:20   GGAGGCAAAGCAAAAUCAAC   1   |||||||||=|||||||||| targets:1   CCUCCGUUUUGUUUUAGUUG   20 Target Full Sequence	1.5	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:20   GGAGGCAAAGCAAAAUCAAC   1   |||||||||=|||||||||| targets:1   CCUCCGUUUUGUUUUAGUUG   20 Target Full Sequence	1.5	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
EU957363.1	ncRNA:24   UAA----GGGAGGCAAAGCAAAAUCAAC   1   |||----|=|||=|||||*||||||||| targets:464   AUUUACCCUCUCUGUUUCUUUUUAGUUG   491 Target Full Sequence	2.5	Zea mays clone 1589847 mRNA sequence	NA	coding protein	psRNATarget
EZ080914.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*||*|||||||||||||||*||| targets:109   ACUCACUCCGUUUCGUUUUAAUUG   132 Target Full Sequence	1.5	TSA: Zea mays contig16553, mRNA sequence	NA	coding protein	psRNATarget
EU976025.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|===||||||||*||||||||| targets:829   ACUUUUUCCGUUUCUUUUUAGUUG   852 Target Full Sequence	2.5	Zea mays clone 508899 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152046.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   |*|===||||||||*||||||||| targets:829   ACUUUUUCCGUUUCUUUUUAGUUG   852 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278927 (LOC100278927), mRNA	NA	coding protein	psRNATarget
JB166818.1	ncRNA:22   AGGGAGGCAAAGCAAAAUCAAC   1   |==|||=|||||*||||||||| targets:1   UUUCUCUGUUUCUUUUUAGUUG   22 Target Full Sequence	2.5	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
HI406357.1	ncRNA:22   AGGGAGGCAAAGCAAAAUCAAC   1   |==|||=|||||*||||||||| targets:1   UUUCUCUGUUUCUUUUUAGUUG   22 Target Full Sequence	2.5	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:22   AGGGAGGCAAAGCAAAAUCAAC   1   |==|||=|||||*||||||||| targets:1   UUUCUCUGUUUCUUUUUAGUUG   22 Target Full Sequence	2.5	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
EU955357.1	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   **|==||=||||||*||||||||| targets:1257   CGUUUCUUCGUUUCUUUUUAGUUG   1280 Target Full Sequence	2.5	Zea mays clone 1529261 senescence-inducible chloroplast stay-green protein 1 mRNA, complete cds; nuclear gene for chloroplast product	NA	coding protein	psRNATarget
NM_001112301.2	ncRNA:24   UAAGGGAGGCAAAGCAAAAUCAAC   1   **|==||=||||||*||||||||| targets:1319   CGUUUCUUCGUUUCUUUUUAGUUG   1342 Target Full Sequence	2.5	Zea mays senescence-inducible chloroplast stay-green protein 2 (SGR2), mRNA	NA	coding protein	psRNATarget