Search result

BaseInfo

ncRNA ID novel_zma_miR3361
Species Zea mays
Class miRNA
Genome position Chr9:17255567-17255694 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 105 - GUUUUUAAUUUAAGUUCGUGGGCC - 128
Stem-loop(if miRNA) --U     GG     -CG                           ---         U    CCUG
   UCAUG  UUUGA   AAGAACGUGGGUACCCACGUUUUUAAU   UUAAGUUCG GCGG    A
   |||||  |||||   |||||||||||||||||||||||||||   ||||||||| ||||    C
   GGUGC  GAAUU   UUUUUGCACCCAUGGGUGCAAAGAUUA   AAUUCAAGC UGCC    U
CCG     UU     UAA                           UGG         -    AAAG
Stem-loop sequence UUCAUGGGUUUGACGAAGAACGUGGGUACCCACGUUUUUAAUUUAAGUUCGUGCGGCCUGACUGAAACCGUCGAACUUAAGGUAUUAGAAACGUGGGUACCCACGUUUUUAAUUUAAGUUCGUGGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ107231.1
ncRNA:24   CCGGGUGCUUGAAUUUAAUUUUUG   1
  |*=*|||||*=||||||||||||*
targets:32   GAUACACGAUUUUAAAUUAAAAAA   55

3.0 TSA: Zea mays contig42889, mRNA sequence NA coding protein psRNATarget