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BaseInfo

ncRNA ID osa-miR169i-5p.2
Species Oryza sativa
Class miRNA
Genome position Chr8:26803116-26803291 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 21 - UGGUGAUAAGGGUGUAGCUCUG - 42
Stem-loop(if miRNA) -GGAA    -     G  U     -            UA    U  -          U    U       UC  U  GUA    A     C
     GAGA GCAAG CU GCAUG GUGAUAAGGGUG  GCUC GG UAGCCAAGGA GACU GCCUGUG  CU GU   GAGG UCAUU A
     |||| ||||| || ||||| ||||||||||||  |||| || |||||||||| |||| |||||||  || ||   |||| ||||| G
     CUCU CGUUC GA UGUAC CACUAUUCUCGC  UGAG CU AUCGGUUCCU CUGA CGGAUAC  GG CA   UUCC AGUAA A
AGUUG    A     G  U     U            --    U  G          -    -       UU  U  -AG    G     A
Stem-loop sequence GGAAGAGAGCAAGGCUUGCAUGGUGAUAAGGGUGUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGUCCUUGUGUAGAGGAUCAUUCAGAAAAUGAGCCUUGAACUGGUUCAUAGGCAGUCUCCUUGGCUAGUCUGAGUCGCUCUUAUCACUCAUGUUAGGCUUGCAUCUCGUUGA

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).
3 PMID:22585409
"Novel miRNAs in the control of arsenite levels in rice";
Liu Q;
Funct Integr Genomics. 12:649-658(2012).