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BaseInfo

ncRNA ID novel_zma_miR3355
Species Zea mays
Class miRNA
Genome position Chr1:191559995-191560165 [+]
Reference genome RefGen_v4
Source SRR2089715;SRR2089708
Length 24
Mature sequence(if miRNA) 148 - UCUUAACGUUAAGUUCGUCGGGGC - 171
Stem-loop(if miRNA) --    U         AUA                          ------------C GGAACAAAUUCAACGGCCCCCGUCGAACUUAA
  CCCG CGAACUUAA   UAAGAACGUGGGUGCCGUCGAACUUA             G                                A
  |||| |||||||||   ||||||||||||||||||||||||||             |                                A
  GGGC GCUUGAAUU   AUUCUUGCACCCAUGGCAGCUUGAAU             C                                A
CG    U         GCA                          UGUAAUUUUUGCA CCAUGGCAGCUUGAAUUGUAAUUCUUGCACCC
Stem-loop sequence CCCGUCGAACUUAAAUAUAAGAACGUGGGUGCCGUCGAACUUACGGGAACAAAUUCAACGGCCCCCGUCGAACUUAAAAACCCACGUUCUUAAUGUUAAGUUCGACGGUACCCACGUUUUUAAUGUUAAGUUCGACGGUACCCACGUUCUUAACGUUAAGUUCGUCGGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406682.1
ncRNA:24   CGGGGCUGCUUGAAUUGCAAUUCU   1
  ||||||*|||||||||*|||||||
targets:4   GCCCCGUCGAACUUAAGGUUAAGA   27

2.5 Sequence 4807 from Patent EP2074227 NA coding protein psRNATarget
JB167143.1
ncRNA:24   CGGGGCUGCUUGAAUUGCAAUUCU   1
  ||||||*|||||||||*|||||||
targets:4   GCCCCGUCGAACUUAAGGUUAAGA   27

2.5 Sequence 4807 from Patent EP2559767 NA coding protein psRNATarget
LQ238812.1
ncRNA:24   CGGGGCUGCUUGAAUUGCAAUUCU   1
  ||||||*|||||||||*|||||||
targets:4   GCCCCGUCGAACUUAAGGUUAAGA   27

2.5 Sequence 4807 from Patent EP2985353 NA coding protein psRNATarget