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BaseInfo

ncRNA ID	osa-miR169i-5p.1
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:26803116-26803291 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	44 - UAGCCAAGGAUGACUUGCCUG - 64
Stem-loop(if miRNA)	-GGAA    -     G  U     -            UA    U  -          U    U       UC  U  GUA    A     C      GAGA GCAAG CU GCAUG GUGAUAAGGGUG  GCUC GG UAGCCAAGGA GACU GCCUGUG  CU GU   GAGG UCAUU A      |||| ||||| || ||||| ||||||||||||  |||| || |||||||||| |||| |||||||  || ||   |||| ||||| G      CUCU CGUUC GA UGUAC CACUAUUCUCGC  UGAG CU AUCGGUUCCU CUGA CGGAUAC  GG CA   UUCC AGUAA A AGUUG    A     G  U     U            --    U  G          -    -       UU  U  -AG    G     A
Stem-loop sequence	GGAAGAGAGCAAGGCUUGCAUGGUGAUAAGGGUGUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGUCCUUGUGUAGAGGAUCAUUCAGAAAAUGAGCCUUGAACUGGUUCAUAGGCAGUCUCCUUGGCUAGUCUGAGUCGCUCUUAUCACUCAUGUUAGGCUUGCAUCUCGUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767949.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:964   UAGGCAAUUCAUCCUUGGCUU   984 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
AK318574.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:989   UAGGCAAUUCAUCCUUGGCUU   1009 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence	NA	coding protein	psRNATarget
XM_015767947.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:1217   UAGGCAAUUCAUCCUUGGCUU   1237 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015767946.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:1341   UAGGCAAUUCAUCCUUGGCUU   1361 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015790064.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||= targets:1189   GUGGCAAUUCAUCCUUGGCUG   1209 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-2 (LOC4342440), mRNA	nuclear transcription factor Y subunit A-2(LOC4342440)	coding protein	psRNATarget
JC611919.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:807   GUGGCAAUUCAUCCUUGGCUU   827 Target Full Sequence	2.0	Sequence 81 from Patent WO2014106838	NA	coding protein	psRNATarget
AB288031.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1020   GUGGCAAUUCAUCCUUGGCUU   1040 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2E mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK101684.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1166   GUGGCAAUUCAUCCUUGGCUU   1186 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence	NA	coding protein	psRNATarget
CT834459.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1237   GUGGCAAUUCAUCCUUGGCUU   1257 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA222O23, full insert sequence	NA	coding protein	psRNATarget
XM_015791076.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1198   GUGGCAAUUCAUCCUUGGCUU   1218 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
EU847011.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1116   GUGGCAAUUCAUCCUUGGCUU   1136 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
XM_015791073.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1329   GUGGCAAUUCAUCCUUGGCUU   1349 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK062135.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1244   GUGGCAAUUCAUCCUUGGCUU   1264 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015791075.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1353   GUGGCAAUUCAUCCUUGGCUU   1373 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK071595.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1280   GUGGCAAUUCAUCCUUGGCUU   1300 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023106F21, full insert sequence	NA	coding protein	psRNATarget
XM_015776494.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1286   GUGGCAAUUCAUCCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4333094), mRNA	nuclear transcription factor Y subunit A-4(LOC4333094)	coding protein	psRNATarget
XM_015791074.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:2327   GUGGCAAUUCAUCCUUGGCUU   2347 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).
3	PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice"; Liu Q; Funct Integr Genomics. 12:649-658(2012).