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BaseInfo

ncRNA ID	novel_zma_miR3340
Species	Zea mays
Class	miRNA
Genome position	Chr8:141806155-141806271 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	94 - GUUUAGUGGACAGAGAAAUGGAGG - 117
Stem-loop(if miRNA)	--    A     C  AG           A             A CU          CAA   GUUU GUGGA AG  AAAUGGAGGGA UUUAUGGGGAGGG U  UCUUGUUAUU   A   |||| ||||| ||  ||||||||||| ||||||||||||| |  ||||||||||   CGAA CACCU UC  UUUACUUUUCU AGAUAUCCUUUCC A  AGAACGAUAA   A CC    C     A  CU           -             A AU          UUU
Stem-loop sequence	GUUUAGUGGACAGAGAAAUGGAGGGAAUUUAUGGGGAGGGAUCUUCUUGUUAUUCAAAAUUUAAUAGCAAGAUAAACCUUUCCUAUAGAUCUUUUCAUUUUCCUAUCCACCAAGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654742.2	ncRNA:24   GGAGGUAAAGAGACAGGUGAUUUG   1   |||||||||||||||||||||||| targets:1925   CCUCCAUUUCUCUGUCCACUAAAC   1948 Target Full Sequence	0.0	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654741.2	ncRNA:24   GGAGGUAAAGAGACAGGUGAUUUG   1   |||||||||||||||||||||||| targets:1989   CCUCCAUUUCUCUGUCCACUAAAC   2012 Target Full Sequence	0.0	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552746.1	ncRNA:24   GGAGGUAAAGAGACAGGUGAUUUG   1   |||=||||||*||||||||*|||| targets:5607   CCUUCAUUUCACUGUCCACCAAAC   5630 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654224 (LOC103654224), transcript variant X1, mRNA	NA	coding protein	psRNATarget