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BaseInfo

ncRNA ID	novel_zma_miR3331
Species	Zea mays
Class	miRNA
Genome position	Chr8:150852071-150852135 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	23
Mature sequence(if miRNA)	1 - GUUUUUUUUAUUUGUCGCUGGAU - 23
Stem-loop(if miRNA)	---G                  G         A     UUUUUUUUAUUUGUCGCU GAUAGUGCA U     |||||||||||||||||| |||||||||     AAGAAAAAUAAACAGCGA CUAUCACGU U GGCA                  A         U
Stem-loop sequence	GUUUUUUUUAUUUGUCGCUGGAUAGUGCAAUUUUGCACUAUCAAGCGACAAAUAAAAAGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403294.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||=||||||||||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAAAC   83 Target Full Sequence	0.0	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235424.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||=||||||||||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAAAC   83 Target Full Sequence	0.0	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget
JB163755.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||=||||||||||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAAAC   83 Target Full Sequence	0.0	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
HI409615.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||=|||||||||||||||=|||| targets:54   AUUCAGCGACAAAUAAAAGAAAC   76 Target Full Sequence	1.5	Sequence 7740 from Patent EP2074227	NA	coding protein	psRNATarget
JB170076.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||=|||||||||||||||=|||| targets:54   AUUCAGCGACAAAUAAAAGAAAC   76 Target Full Sequence	1.5	Sequence 7740 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241745.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||=|||||||||||||||=|||| targets:54   AUUCAGCGACAAAUAAAAGAAAC   76 Target Full Sequence	1.5	Sequence 7740 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242145.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:54   AUCCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 8140 from Patent EP2985353	NA	coding protein	psRNATarget
HI408618.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:54   AUCCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 6743 from Patent EP2074227	NA	coding protein	psRNATarget
HI410015.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:54   AUCCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 8140 from Patent EP2074227	NA	coding protein	psRNATarget
JB170476.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:54   AUCCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 8140 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240748.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:54   AUCCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 6743 from Patent EP2985353	NA	coding protein	psRNATarget
JB169079.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:54   AUCCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 6743 from Patent EP2559767	NA	coding protein	psRNATarget
JB163862.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:61   AUCCAGCGACAAAUAAAAAGAAAC   84 Target Full Sequence	3.0	Sequence 1526 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235531.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:61   AUCCAGCGACAAAUAAAAAGAAAC   84 Target Full Sequence	3.0	Sequence 1526 from Patent EP2985353	NA	coding protein	psRNATarget
HI403401.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:61   AUCCAGCGACAAAUAAAAAGAAAC   84 Target Full Sequence	3.0	Sequence 1526 from Patent EP2074227	NA	coding protein	psRNATarget
EZ061437.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:218   AUCCAGCGACAAAUAAAAAGAAAC   241 Target Full Sequence	3.0	TSA: Zea mays contig62559, mRNA sequence	NA	coding protein	psRNATarget
BT060817.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:280   AUCCAGCGACAAAUAAAAAGAAAC   303 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1216   AUCCAGCGACAAAUAAAAAGAAAC   1239 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1338   AUCCAGCGACAAAUAAAAAGAAAC   1361 Target Full Sequence	3.0	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1338   AUCCAGCGACAAAUAAAAAGAAAC   1361 Target Full Sequence	3.0	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647346.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:191   AUCCAGCGACAAAUAAAAAGAAAC   214 Target Full Sequence	3.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA	NA	coding protein	psRNATarget
XM_008651544.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1405   AUCCAGCGACAAAUAAAAAGAAAC   1428 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1322   AUCCAGCGACAAAUAAAAAGAAAC   1345 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1577   AUCCAGCGACAAAUAAAAAGAAAC   1600 Target Full Sequence	3.0	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1593   AUCCAGCGACAAAUAAAAAGAAAC   1616 Target Full Sequence	3.0	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
EU957018.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2050   AUCCAGCGACAAAUAAAAAGAAAC   2073 Target Full Sequence	3.0	Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2546   AUCCAGCGACAAAUAAAAAGAAAC   2569 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546615.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2846   AUCCAGCGACAAAUAAAAAGAAAC   2869 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546614.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2863   AUCCAGCGACAAAUAAAAAGAAAC   2886 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546612.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2969   AUCCAGCGACAAAUAAAAAGAAAC   2992 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546613.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:3748   AUCCAGCGACAAAUAAAAAGAAAC   3771 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||||||||||||||||||=||* targets:61   AUCCAGCGACAAAUAAAAAGAAA   83 Target Full Sequence	2.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
HI403279.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||||||||||||||||||=||* targets:61   AUCCAGCGACAAAUAAAAAGAAA   83 Target Full Sequence	2.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
JB163740.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||||||||||||||||||=||* targets:61   AUCCAGCGACAAAUAAAAAGAAA   83 Target Full Sequence	2.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
JB169031.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||*||||||||||||||||=||| targets:54   AUNCAGCGACAAAUAAAAAGAAC   76 Target Full Sequence	1.5	Sequence 6695 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240700.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||*||||||||||||||||=||| targets:54   AUNCAGCGACAAAUAAAAAGAAC   76 Target Full Sequence	1.5	Sequence 6695 from Patent EP2985353	NA	coding protein	psRNATarget
HI408570.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||*||||||||||||||||=||| targets:54   AUNCAGCGACAAAUAAAAAGAAC   76 Target Full Sequence	1.5	Sequence 6695 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242091.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:54   AUUCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 8086 from Patent EP2985353	NA	coding protein	psRNATarget
JB169406.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:54   AUUCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 7070 from Patent EP2559767	NA	coding protein	psRNATarget
JB170422.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:54   AUUCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 8086 from Patent EP2559767	NA	coding protein	psRNATarget
HI408945.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:54   AUUCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 7070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241075.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:54   AUUCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 7070 from Patent EP2985353	NA	coding protein	psRNATarget
HI409961.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:54   AUUCAGCGACAAAUAAAAAGAAAC   77 Target Full Sequence	3.0	Sequence 8086 from Patent EP2074227	NA	coding protein	psRNATarget
EU964901.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:547   AUUCAGCGACAAAUAAAAAGAAAC   570 Target Full Sequence	3.0	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
EU974849.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:619   AUUCAGCGACAAAUAAAAAGAAAC   642 Target Full Sequence	3.0	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||=||||||||||||||||-|||| targets:619   AUUCAGCGACAAAUAAAAAGAAAC   642 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
LQ241746.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||=|||||||||||||||=||* targets:54   AUCUAGCGACAAAUAAAAAGAAA   76 Target Full Sequence	2.5	Sequence 7741 from Patent EP2985353	NA	coding protein	psRNATarget
JB170077.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||=|||||||||||||||=||* targets:54   AUCUAGCGACAAAUAAAAAGAAA   76 Target Full Sequence	2.5	Sequence 7741 from Patent EP2559767	NA	coding protein	psRNATarget
HI409616.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   |||=|||||||||||||||=||* targets:54   AUCUAGCGACAAAUAAAAAGAAA   76 Target Full Sequence	2.5	Sequence 7741 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237958.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||||||||||*|||||||||||* targets:50   AUCCAGCGACUAAUAAAAAAAAA   72 Target Full Sequence	2.5	Sequence 3953 from Patent EP2985353	NA	coding protein	psRNATarget
JB166289.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||||||||||*|||||||||||* targets:50   AUCCAGCGACUAAUAAAAAAAAA   72 Target Full Sequence	2.5	Sequence 3953 from Patent EP2559767	NA	coding protein	psRNATarget
HI405828.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||||||||||*|||||||||||* targets:50   AUCCAGCGACUAAUAAAAAAAAA   72 Target Full Sequence	2.5	Sequence 3953 from Patent EP2074227	NA	coding protein	psRNATarget
HI405860.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||||||||||*|||||||||||* targets:55   AUCCAGCGACUAAUAAAAAAAAA   77 Target Full Sequence	2.5	Sequence 3985 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237990.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||||||||||*|||||||||||* targets:55   AUCCAGCGACUAAUAAAAAAAAA   77 Target Full Sequence	2.5	Sequence 3985 from Patent EP2985353	NA	coding protein	psRNATarget
JB166321.1	ncRNA:23   UAGGUCGCUGUUUAUUUUUUUUG   1   ||||||||||*|||||||||||* targets:55   AUCCAGCGACUAAUAAAAAAAAA   77 Target Full Sequence	2.5	Sequence 3985 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001196908.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||*||||||||||||||||-|||| targets:804   AUACAGCGACAAAUAAAAAGAAAC   827 Target Full Sequence	3.0	Zea mays uncharacterized LOC100502430 (LOC100502430), mRNA	NA	coding protein	psRNATarget
BT088136.1	ncRNA:23   UAGGUCGCUGUUUAUUUUU-UUUG   1   ||*||||||||||||||||-|||| targets:804   AUACAGCGACAAAUAAAAAGAAAC   827 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0030P23 mRNA, complete cds	NA	coding protein	psRNATarget