Search result

BaseInfo

ncRNA ID	ath-miRf10041-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - UCGACCAGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	-        AGG          A  U   CGA  G   C    GG GG         A AGAC ACUCGACC   UGGUCGAGUG AG GAU   AU ACU UCGU  U  UACUCGGCC G |||| ||||||||   |||||||||| || |||   || ||| ||||  |  ||||||||| UCUG UGAGCUGG   ACCAGCUCAU UC CUG   UG UGA AGCG  G  GUGAGCUGG A     G        GGG          A  -   AAG  G   -    GA UA         G
Stem-loop sequence	AGACACUCGACCAGGUGGUCGAGUGAAGUGAUCGAAUGACUCUCGUGGUGGUACUCGGCCAGAGGGUCGAGUGAUGAGGCGAAGUGGUGAAGUCCUAUACUCGACCAGGGGGUCGAGUGGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ||||||||||||||||||||| targets:89   ACCACUCGACCCCCUGGUCGA   109 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ||||||||||||||||||||| targets:123   ACCACUCGACCCCCUGGUCGA   143 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ||||||||||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGA   518 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ||||||||||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGA   518 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   =|||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGA   249 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   =|||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGA   249 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   |=||||||||||||||||||| targets:1570   AUCACUCGACCCCCUGGUCGA   1590 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   *|=|||||||||||||||||| targets:180   UCUACUCGACCCCCUGGUCGA   200 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   *|=|||||||||||||||||| targets:180   UCUACUCGACCCCCUGGUCGA   200 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   |||||||||||||*||||||| targets:488   ACCACUCGACCCCGUGGUCGA   508 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   |||||||||||||*||||||| targets:534   ACCACUCGACCCCAUGGUCGA   554 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ||||||||||||||*|||||| targets:1103   ACCACUCGACCCCCAGGUCGA   1123 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   |||||||||||||*||||||| targets:1208   ACCACUCGACCCCGUGGUCGA   1228 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ===||||*||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGA   320 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   ===||||*||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGA   320 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   |==||*||||||||||||||| targets:582   AUUACYCGACCCCCUGGUCGA   602 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   UGG--UGAGCUGGGGGACCAGCU   1   |||--|||||||||||||||||| targets:305   ACCUUACUCGACCCCCUGGUCGA   327 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   UGGUGAGCUGGGGGACCAGCU   1   *|=|||||||||||*|||||| targets:186   UCUACUCGACCCCCAGGUCGA   206 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget