Search result

BaseInfo

ncRNA ID	novel_zma_miR3324
Species	Zea mays
Class	miRNA
Genome position	Chr7:54415964-54416059 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	73 - CCUUCGAUCCAGACGCAACCGAAC - 96
Stem-loop(if miRNA)	--   U             A     G               AUUCUAA   UUG UUGUGUCUGGAUC AAGGG AUUGGAGUGGAUUAA       A   ||| ||||||||||||| ||||| |||||||||||||||   AGC AACGCAGACCUAG UUCCC UAACCUCACCUAAUU       U CA   C             C     A               ACCUAAU
Stem-loop sequence	UUGUUUGUGUCUGGAUCAAAGGGGAUUGGAGUGGAUUAAAUUCUAAAUUAAUCCAUUAAUCCACUCCAAUACCCUUCGAUCCAGACGCAACCGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235121.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||||||||||||||||||||||| targets:4   GUUCGGUUGCGUCUGGAUCGAAGG   27 Target Full Sequence	0.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||||||||||||||||||||||| targets:4   GUUCGGUUGCGUCUGGAUCGAAGG   27 Target Full Sequence	0.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||||||||||||||||||||||| targets:4   GUUCGGUUGCGUCUGGAUCGAAGG   27 Target Full Sequence	0.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   ||||||||*||||||||||||||| targets:978   GUUCGGUUACGUCUGGAUCGAAGG   1001 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
AY106606.2	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||||||||=||||*||||||||| targets:430   GUUCGGUUGUGUCUAGAUCGAAGG   453 Target Full Sequence	2.5	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||||||||=||||*||||||||| targets:710   GUUCGGUUGUGUCUAGAUCGAAGG   733 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235143.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   *|||*||||||||||||||||||| targets:4   CUUCUGUUGCGUCUGGAUCGAAGG   27 Target Full Sequence	0.0	Sequence 1138 from Patent EP2985353	NA	coding protein	psRNATarget
JB163474.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   *|||*||||||||||||||||||| targets:4   CUUCUGUUGCGUCUGGAUCGAAGG   27 Target Full Sequence	0.0	Sequence 1138 from Patent EP2559767	NA	coding protein	psRNATarget
HI403013.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   *|||*||||||||||||||||||| targets:4   CUUCUGUUGCGUCUGGAUCGAAGG   27 Target Full Sequence	0.0	Sequence 1138 from Patent EP2074227	NA	coding protein	psRNATarget
EZ056710.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   *|||||||||||||||||||||** targets:145   AUUCGGUUGCGUCUGGAUCGAAAA   168 Target Full Sequence	2.5	TSA: Zea mays contig57832, mRNA sequence	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||=|||||=|||||*|||||||| targets:51   GUUUGGUUGUGUCUGUAUCGAAGG   74 Target Full Sequence	2.5	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||=|||||=|||||*|||||||| targets:121   GUUUGGUUGUGUCUGUAUCGAAGG   144 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   |||=|||||=|||||*|||||||| targets:110   GUUUGGUUGUGUCUGUAUCGAAGG   133 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
EU944906.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   ||||||||*=|||||||||||||* targets:269   GUUCGGUUAUGUCUGGAUCGAAGA   292 Target Full Sequence	3.0	Zea mays clone 235068 mRNA sequence	NA	coding protein	psRNATarget
BT068345.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   ||||*||||||||||||||*|||| targets:589   GUUCCGUUGCGUCUGGAUCAAAGG   612 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0130D13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176441.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   ||||*||||||||||||||*|||| targets:589   GUUCCGUUGCGUCUGGAUCAAAGG   612 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383809 (LOC100383809), mRNA	NA	coding protein	psRNATarget
EU951391.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   **|||||||||*|||||||||||| targets:269   UAUCGGUUGCGCCUGGAUCGAAGG   292 Target Full Sequence	1.5	Zea mays clone 698039 mRNA sequence	NA	coding protein	psRNATarget
XM_008647317.2	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   ||||*||||||||||||||*|||* targets:1533   GUUCCGUUGCGUCUGGAUCAAAGA   1556 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383809 (LOC100383809), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538788.1	ncRNA:24   CAAGCCAACGCAGACCUAGCUUCC   1   ||||*||||||||||||||*|||* targets:1665   GUUCCGUUGCGUCUGGAUCAAAGA   1688 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383809 (LOC100383809), transcript variant X2, mRNA	NA	coding protein	psRNATarget