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BaseInfo

ncRNA ID	novel_zma_miR3322
Species	Zea mays
Class	miRNA
Genome position	Chr7:17950044-17950127 [-]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089700;SRR2089701
Length	24
Mature sequence(if miRNA)	61 - AUGGAUUGAAGGGGAUUGAGUCGG - 84
Stem-loop(if miRNA)	--        A         A  ------C  UUUUAAUCCCUAG   AUGGAUUG AGGGGAUUG GU       GG             U   |||||||| ||||||||| ||       ||             A   UACCUAAC UCCCCUAAC CA       UA             A UA        C         -  UACCUAA  UUCCCUAAAACUG
Stem-loop sequence	AUGGAUUGAAGGGGAUUGAGUCGGUUUUAAUCCCUAGUAAGUCAAAAUCCCUUAUAAUCCAUACCAAUCCCCUCCAAUCCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064472.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||||||||||| targets:1416   CCGUAUCAAUCCCCUUCAAUCCAU   1439 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||||||||||| targets:1460   CCGUAUCAAUCCCCUUCAAUCCAU   1483 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||||||||||| targets:1478   CCGUAUCAAUCCCCUUCAAUCCAU   1501 Target Full Sequence	0.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||||||||||| targets:1492   CCGUAUCAAUCCCCUUCAAUCCAU   1515 Target Full Sequence	0.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||||||||||| targets:1492   CCGUAUCAAUCCCCUUCAAUCCAU   1515 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||*|||||||||||*||||||||| targets:601   CCCACUCAAUCCCCCUCAAUCCAU   624 Target Full Sequence	1.5	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||||||||||| targets:971   CCGUAUCAAUCCCCUUCAAUCCAU   994 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||=|||||||||||||||| targets:1693   CCGUAUCGAUCCCCUUCAAUCCAU   1716 Target Full Sequence	1.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||=|||||||||||| targets:3115   CCGUAUCAAUCUCCUUCAAUCCAU   3138 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||--|||||||||||||||||||* targets:87   CC--CUCAAUCCCCUUCAAUCCAG   108 Target Full Sequence	1.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||--|||||||||||||||||||* targets:87   CC--CUCAAUCCCCUUCAAUCCAG   108 Target Full Sequence	1.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||--|||||||||||||||||||* targets:87   CC--CUCAAUCCCCUUCAAUCCAG   108 Target Full Sequence	1.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   *=||=|=|||||||||||||||*| targets:182   AUGAUUUAAUCCCCUUCAAUCCCU   205 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||**||||||||||*||||||||| targets:75   CCACCUCAAUCCCCCUCAAUCCAU   98 Target Full Sequence	1.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||**||||||||||*||||||||| targets:75   CCACCUCAAUCCCCCUCAAUCCAU   98 Target Full Sequence	1.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||**||||||||||*||||||||| targets:75   CCACCUCAAUCCCCCUCAAUCCAU   98 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||*|||||||| targets:694   CCGUAUCAAUCCCCUCCAAUCCAU   717 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||*|||||||| targets:17   CCGUAUCAAUCCCCUCCAAUCCAU   40 Target Full Sequence	1.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||*|||||||| targets:1975   CCGUAUCAAUCCCCUCCAAUCCAU   1998 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||*|||||||| targets:1975   CCGUAUCAAUCCCCUCCAAUCCAU   1998 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||*|||||||| targets:1625   CCGUAUCAAUCCCCUCCAAUCCAU   1648 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||--||||||||||*||||||||| targets:1966   CC--CUCAAUCCCCCUCAAUCCAU   1987 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**||||||||||*|||||||| targets:296   CCGUAUCAAUCCCCUCCAAUCCAU   319 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||--|||=||||||*||||||||| targets:27   CC--CUCGAUCCCCCUCAAUCCAU   48 Target Full Sequence	2.5	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ||--=|||||||||*||||||||| targets:846   CC--UUCAAUCCCCCUCAAUCCAU   867 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**|=||||||||*|||||||| targets:1155   CCGUAUUAAUCCCCUCCAAUCCAU   1178 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   |||**|=||||||||*|||||||| targets:1193   CCGUAUUAAUCCCCUCCAAUCCAU   1216 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ==**=||||||||*|||||||||| targets:381   UUUUUUCAAUCCCAUUCAAUCCAU   404 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   GGCUGAGUUAGGGGAAGUUAGGUA   1   ==**=||||||||*|||||||||| targets:381   UUUUUUCAAUCCCAUUCAAUCCAU   404 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget