Search result

BaseInfo

ncRNA ID	novel_zma_miR3311
Species	Zea mays
Class	miRNA
Genome position	Chr8:161187165-161187242 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647386
Length	20
Mature sequence(if miRNA)	59 - UUUUCUAAAAGCCGACUUUU - 78
Stem-loop(if miRNA)	--UUU       -   G   UUUCUGUAGUGCAAAUUUG      UCUAAAA GCC ACU                   A      ||||||| ||| |||                   A      AGGUUUU CGG GAU                   A AAGGU       U   U   UUUCGUCCAGGUCCCCACG
Stem-loop sequence	UUUUCUAAAAGCCGACUUUUCUGUAGUGCAAAUUUGAAAGCACCCCUGGACCUGCUUUUAGUGGCUUUUUGGAUGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ082616.1	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||||||| targets:70   GAAAGUCGGCUUUUAGAAAA   89 Target Full Sequence	0.0	TSA: Zea mays contig18259, mRNA sequence	NA	coding protein	psRNATarget
EZ054115.1	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||||||| targets:10   GAAAGUCGGCUUUUAGAAAA   29 Target Full Sequence	0.0	TSA: Zea mays contig55237, mRNA sequence	NA	coding protein	psRNATarget
BT054933.2	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||||||| targets:1027   GAAAGUCGGCUUUUAGAAAA   1046 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0071E07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152768.1	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||||||| targets:1027   GAAAGUCGGCUUUUAGAAAA   1046 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279813 (LOC100279813), mRNA	NA	coding protein	psRNATarget
XM_008657246.2	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||*|||| targets:56   GAAAGUCGGCUUUUAAAAAA   75 Target Full Sequence	1.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657243.2	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||*|||| targets:56   GAAAGUCGGCUUUUAAAAAA   75 Target Full Sequence	1.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657245.2	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =||||||||||||||*|||| targets:56   GAAAGUCGGCUUUUAAAAAA   75 Target Full Sequence	1.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548185.1	ncRNA:20   UUUUCAGCCGAAAAUCUUUU   1   =|||*|||*||||||||||| targets:1520   GAAAUUCGACUUUUAGAAAA   1539 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103646073 (LOC103646073), transcript variant X3, mRNA	NA	coding protein	psRNATarget