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BaseInfo

ncRNA ID	novel_zma_miR3309
Species	Zea mays
Class	miRNA
Genome position	Chr7:175591894-175591971 [-]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089708
Length	22
Mature sequence(if miRNA)	57 - CGUCCCUCUCCUGGCCGUGGAU - 78
Stem-loop(if miRNA)	C  -   -    C        G     --     -     U  GU CCC UCUC UGGCCGUG AUCUC  CCAUG CCACG G  || ||| |||| |||||||| |||||  ||||| |||||  CG GGG AGGG GCCGGUGC UGGAG  GGUGC GGUGC C U  U   U    C        -     CU     U     U
Stem-loop sequence	CGUCCCUCUCCUGGCCGUGGAUCUCCCAUGCCACGUGCUCGUGGUCGUGGUCGAGGUCGUGGCCGCGGGAUGGGUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551362.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =|||||*||||||||||||||* targets:577   GUCCACAGCCAGGAGAGGGACU   598 Target Full Sequence	2.0	PREDICTED: Zea mays trihelix transcription factor GTL1 (LOC100273264), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680665.2	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =|||||*||||||||||||||* targets:501   GUCCACAGCCAGGAGAGGGACU   522 Target Full Sequence	2.0	PREDICTED: Zea mays trihelix transcription factor GTL1 (LOC100273264), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945316.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =*=|=|||||||||||||*||| targets:601   GCUCGCGGCCAGGAGAGGCACG   622 Target Full Sequence	2.5	Zea mays clone 257973 mRNA sequence	NA	coding protein	psRNATarget
EU969576.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =*=|=|||||||||||||*||| targets:925   GCUCGCGGCCAGGAGAGGCACG   946 Target Full Sequence	2.5	Zea mays clone 332592 glucan endo-1,3-beta-glucosidase 5 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT034763.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =*=|=|||||||||||||*||| targets:1035   GCUCGCGGCCAGGAGAGGCACG   1056 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0015O07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147188.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =*=|=|||||||||||||*||| targets:910   GCUCGCGGCCAGGAGAGGCACG   931 Target Full Sequence	2.5	Zea mays putative O-Glycosyl hydrolase superfamily protein (LOC100272735), mRNA	NA	coding protein	psRNATarget
BT039303.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =*=|=|||||||||||||*||| targets:910   GCUCGCGGCCAGGAGAGGCACG   931 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005B10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066246.1	ncRNA:22   UAGGUGCCGGUCCUCUCCCUGC   1   =*=|=|||||||||||||*||| targets:1127   GCUCGCGGCCAGGAGAGGCACG   1148 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0125C18 mRNA, complete cds	NA	coding protein	psRNATarget