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BaseInfo

ncRNA ID	novel_zma_miR3306
Species	Zea mays
Class	miRNA
Genome position	Chr7:179755023-179755147 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR3385575
Length	24
Mature sequence(if miRNA)	1 - GCUUGUUUGGGAUCAAGGGUAAUG - 24
Stem-loop(if miRNA)	--  UU        U    -  U       U    --    GGGC      AUC     U    A   GC  GUUUGGGA CAAG GG AAUGGAG GGGU  GAAG    UAGAAU   UCAUU UUUA U   ||  |||||||| |||| || ||||||| ||||  ||||    ||||||   ||||| ||||   CG  CAAACCCU GUUC CC UUAUUUC CCUA  CUUC    AUCUUA   AGUGA AAAU U CC  UU        C    A  -       U    AC    -AUA      GGA     U    U
Stem-loop sequence	GCUUGUUUGGGAUCAAGGGUAAUGGAGUGGGUGAAGGGGCUAGAAUAUCUCAUUUUUUAAUUUUAAAUAGUGAAGGAUUCUAAUACUUCCAAUCCUCUUUAUUCCACUUGCUCCCAAACUUGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008663899.2	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||||*|*||||*|||||||||||| targets:2729   CAUUUCACUUGCUCCCAAACAAGC   2752 Target Full Sequence	2.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||||*|*||||*|||||||||||| targets:2641   CAUUUCACUUGCUCCCAAACAAGC   2664 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||||*|*||||*|||||||||||| targets:2641   CAUUUCACUUGCUCCCAAACAAGC   2664 Target Full Sequence	2.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
HI406027.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||||*|*||||*|||||||||||| targets:105   CAUUUCACUUGCUCCCAAACAAGC   128 Target Full Sequence	2.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||||*|*||||*|||||||||||| targets:105   CAUUUCACUUGCUCCCAAACAAGC   128 Target Full Sequence	2.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
JB166488.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||||*|*||||*|||||||||||| targets:105   CAUUUCACUUGCUCCCAAACAAGC   128 Target Full Sequence	2.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   ||*|*||=|||*|||||||||||| targets:27   CAGUCCCUUUGCUCCCAAACAAGC   50 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   =|*|*=|||||*|||||||||||| targets:2792   UAAUCUCCUUGCUCCCAAACAAGC   2815 Target Full Sequence	2.5	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU943966.1	ncRNA:24   GUAAUGGGAACUAGGGUUUGUUCG   1   =|*|*=|||||*|||||||||||| targets:343   UAAUCUCCUUGCUCCCAAACAAGC   366 Target Full Sequence	2.5	Zea mays clone 1702383 mRNA sequence	NA	coding protein	psRNATarget