Search result

BaseInfo

ncRNA ID	novel_zma_miR3304
Species	Zea mays
Class	miRNA
Genome position	Chr7:155103810-155103860 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089703;SRR2089704;SRR2089705
Length	21
Mature sequence(if miRNA)	1 - UAACUCCCGUCGGCCACGGCC - 21
Stem-loop(if miRNA)	--                    C U   UAACUCCCGUCGGCCACGGC G C   |||||||||||||||||||| | G   AUUGAGGGCAGCCGGUGCCG C G UA                    C C
Stem-loop sequence	UAACUCCCGUCGGCCACGGCCGUCGGCCCGCCGUGGCCGACGGGAGUUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552073.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   ||=|*|||||||||||||||| targets:208   GGUCUUGGCCGACGGGAGUUA   228 Target Full Sequence	2.0	PREDICTED: Zea mays mucin-7-like (LOC109945733), mRNA	NA	coding protein	psRNATarget
XM_020549056.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   *||=*|||||||||||||||| targets:2   UGCUCUGGCCGACGGGAGUUA   22 Target Full Sequence	2.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109944332), mRNA	NA	coding protein	psRNATarget
XM_008682440.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   *||=*|||||||||||||||| targets:2   UGCUCUGGCCGACGGGAGUUA   22 Target Full Sequence	2.0	PREDICTED: Zea mays transcriptional regulatory protein AlgP-like (LOC103655736), mRNA	NA	coding protein	psRNATarget
XM_008677949.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   *||=*|||||||||||||||| targets:2   UGCUCUGGCCGACGGGAGUUA   22 Target Full Sequence	2.0	PREDICTED: Zea mays lysine-rich arabinogalactan protein 19-like (LOC103652341), mRNA	NA	coding protein	psRNATarget
XM_020550822.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   *||=*|||||||||||||||| targets:2   UGCUCUGGCCGACGGGAGUUA   22 Target Full Sequence	2.0	PREDICTED: Zea mays transcriptional regulatory protein AlgP-like (LOC109945041), mRNA	NA	coding protein	psRNATarget
XM_008668451.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   *||=*|||||||||||||||| targets:2   UGCUCUGGCCGACGGGAGUUA   22 Target Full Sequence	2.0	PREDICTED: Zea mays basic proline-rich protein-like (LOC103645392), mRNA	NA	coding protein	psRNATarget
BT036217.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:615   GCCCGUGGCCGCCGGGAGUUC   635 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0101C01 mRNA, complete cds	NA	coding protein	psRNATarget
BT062272.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:666   GCCCGUGGCCGCCGGGAGUUC   686 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0272N12 mRNA, complete cds	NA	coding protein	psRNATarget
BT041798.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:621   GCCCGUGGCCGCCGGGAGUUC   641 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057H16 mRNA, complete cds	NA	coding protein	psRNATarget
BT018607.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:669   GCCCGUGGCCGCCGGGAGUUC   689 Target Full Sequence	2.5	Zea mays clone EL01N0450F01.d mRNA sequence	NA	coding protein	psRNATarget
XM_020542013.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:615   GCCCGUGGCCGCCGGGAGUUC   635 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X10, mRNA	NA	coding protein	psRNATarget
NM_001150728.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:613   GCCCGUGGCCGCCGGGAGUUC   633 Target Full Sequence	2.5	Zea mays hypothetical protein (si606058c09b), mRNA	NA	coding protein	psRNATarget
EU966507.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:613   GCCCGUGGCCGCCGGGAGUUC   633 Target Full Sequence	2.5	Zea mays clone 294944 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT063492.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:709   GCCCGUGGCCGCCGGGAGUUC   729 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0068P19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656512.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:705   GCCCGUGGCCGCCGGGAGUUC   725 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008656510.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:820   GCCCGUGGCCGCCGGGAGUUC   840 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008656505.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:646   GCCCGUGGCCGCCGGGAGUUC   666 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008656504.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:673   GCCCGUGGCCGCCGGGAGUUC   693 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008656508.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:696   GCCCGUGGCCGCCGGGAGUUC   716 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008656507.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:705   GCCCGUGGCCGCCGGGAGUUC   725 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008656501.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:750   GCCCGUGGCCGCCGGGAGUUC   770 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656503.2	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:820   GCCCGUGGCCGCCGGGAGUUC   840 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542011.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:1020   GCCCGUGGCCGCCGGGAGUUC   1040 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542012.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:1047   GCCCGUGGCCGCCGGGAGUUC   1067 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542010.1	ncRNA:21   CCGGCACCGGCUGCCCUCAAU   1   |*|||||||||*||||||||* targets:1117   GCCCGUGGCCGCCGGGAGUUC   1137 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X1, mRNA	NA	coding protein	psRNATarget