Search result

BaseInfo

ncRNA ID novel_zma_miR3302
Species Zea mays
Class miRNA
Genome position Chr8:171605730-171605856 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 21
Mature sequence(if miRNA) 1 - ACUAGUAACCGAACAUGGCCU - 21
Stem-loop(if miRNA) --   -              G  A   GA           A            C         A
  GCU UGUUCGGUUGCUAG GG UUG  GGGGAUUGAAG GGAUUAAAUCCC UCCUAUUCA U
  ||| |||||||||||||| || |||  ||||||||||| |||||||||||| |||||||||
  CGG ACAAGCCAAUGAUC CU AAC  CCCCUAACUUC CCUAAUUUAGGG AGGAUAAGU U
UC   U              A  A   UC           C            A         U
Stem-loop sequence GCUUGUUCGGUUGCUAGGGGAUUGGAGGGGAUUGAAGAGGAUUAAAUCCCCUCCUAUUCAAUUUUGAAUAGGAAGGGAUUUAAUCCCCUUCAAUCCCCCUCAAAUCACUAGUAACCGAACAUGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059519.1
ncRNA:21   UCCGGUACAAGCCAAUGAUCA   1
  ||||||*||||||||||||||
targets:410   AGGCCACGUUCGGUUACUAGU   430

1.0 TSA: Zea mays contig60641, mRNA sequence NA coding protein psRNATarget
XM_008654455.2
ncRNA:21   UCCGGUACAAGCCAAUGAUCA   1
  **|||||||||||||||||**
targets:84   UUGCCAUGUUCGGUUACUACA   104

2.5 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 9 (LOC103632710), mRNA NA coding protein psRNATarget