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BaseInfo

ncRNA ID	novel_zma_miR3294
Species	Zea mays
Class	miRNA
Genome position	Chr8:174238955-174239091 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	114 - GAGAUUAUAAUCUAUAUAGAUUAU - 137
Stem-loop(if miRNA)	--             AUA             G      A    A        A  UG  -CAU         GAGAUUAUAAUCU   UAGAUUAUAUAAU UAACUA UUUU AAUUAACA UU  AC    AUUAUAU   |||||||||||||   ||||||||||||| |||||| |||| |||||||| ||  ||    ||||||A   CUUUAAUAUUAGA   GUUUAAUAUAUUA AUUGAU AAAA UUAGUUGU AA  UG    UAAUAUA AA             GAG             G      C    C        -  GU  UAAU
Stem-loop sequence	GAGAUUAUAAUCUAUAUAGAUUAUAUAAUGUAACUAAUUUUAAAUUAACAAUUUGACCAUAUUAUAUAAUAUAAUUAAUGUUGAAUGUUGAUUCAAAACUAGUUAGAUUAUAUAAUUUGGAGAGAUUAUAAUUUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ078154.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||||||||||||||||*| targets:51   AUAAUCUAUAUAGAUUAUAAUCCC   74 Target Full Sequence	1.5	TSA: Zea mays contig13793, mRNA sequence	NA	coding protein	psRNATarget
XM_008657785.2	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*||||||||||||=|| targets:2349   AUAAUCUAAAUAGAUUAUAAUUUC   2372 Target Full Sequence	2.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
NM_001136845.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*|||*||||||||||| targets:376   AUAAUCUACAUAAAUUAUAAUCUC   399 Target Full Sequence	2.5	Zea mays chaperone DNA J2 (cdj2), mRNA	NA	coding protein	psRNATarget
XM_008651828.2	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   |||||*|||*|||||||||||||* targets:412   AUAAUAUAUCUAGAUUAUAAUCUG   435 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g15510, chloroplastic (LOC103630763), mRNA	NA	coding protein	psRNATarget
XM_020547943.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*|*||||||||||||* targets:3421   AUAAUCUAGACAGAUUAUAAUCUA   3444 Target Full Sequence	3.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*|*||||||||||||* targets:3406   AUAAUCUAGACAGAUUAUAAUCUA   3429 Target Full Sequence	3.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*|*||||||||||||* targets:3277   AUAAUCUAGACAGAUUAUAAUCUA   3300 Target Full Sequence	3.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*|*||||||||||||* targets:1292   AUAAUCUAGACAGAUUAUAAUCUA   1315 Target Full Sequence	3.0	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:24   UAUUAGAUAUAUCUAAUAUUAGAG   1   ||||||||*|*||||||||||||* targets:1292   AUAAUCUAGACAGAUUAUAAUCUA   1315 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget