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BaseInfo

ncRNA ID	novel_zma_miR3292
Species	Zea mays
Class	miRNA
Genome position	Chr6:61793422-61793489 [-]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2287031;SRR2287163;SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451005;SRR5451006;SRR2089699;SRR2089701
Length	24
Mature sequence(if miRNA)	45 - CUUAUAGAGUAGUAGAGAUAUGGU - 68
Stem-loop(if miRNA)	-- UU     GUA       -UAU      UUAUA   C  AUAGA   GUAGAGA    GGUUUA     U   |  |||||   |||||||    ||||||     U   G  UAUUU   UAUCUUU    UCAAAU     U UA UU     --A       UUAU      UGAAC
Stem-loop sequence	CUUAUAGAGUAGUAGAGAUAUGGUUUAUUAUAUUUCAAGUUAAACUUAUUUUUCUAUAUUUAUUUGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020537848.1	ncRNA:24   UGGUA-UAGAGAUGAUGAGAUAUUC   1   |||||-||||=|||||||||||||| targets:200   ACCAUUAUCUUUACUACUCUAUAAG   224 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103625840 (LOC103625840), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537849.1	ncRNA:24   UGGUA-UAGAGAUGAUGAGAUAUUC   1   |||||-||||=|||||||||||||| targets:200   ACCAUUAUCUUUACUACUCUAUAAG   224 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103625840 (LOC103625840), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537850.1	ncRNA:24   UGGUA-UAGAGAUGAUGAGAUAUUC   1   |||||-||||=|||||||||||||| targets:200   ACCAUUAUCUUUACUACUCUAUAAG   224 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103625840 (LOC103625840), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537851.1	ncRNA:24   UGGUA-UAGAGAUGAUGAGAUAUUC   1   |||||-||||=|||||||||||||| targets:200   ACCAUUAUCUUUACUACUCUAUAAG   224 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103625840 (LOC103625840), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU961889.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **|||||||||||||||||||||| targets:1131   UACAUAUCUCUACUACUCUAUAAG   1154 Target Full Sequence	0.0	Zea mays clone 238907 mRNA sequence	NA	coding protein	psRNATarget
BT065965.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *|=||||||||||||=|||||||| targets:660   CCUAUAUCUCUACUAUUCUAUAAG   683 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0106J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279829.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *|=||||||||||||=|||||||| targets:660   CCUAUAUCUCUACUAUUCUAUAAG   683 Target Full Sequence	1.5	Zea mays uncharacterized LOC101027207 (LOC101027207), mRNA	NA	coding protein	psRNATarget
XM_008653749.2	ncRNA:24   UG-GUAUAGAGAUGAUGAGAUAUUC   1   ||-==|||||||||||||||||||| targets:2065   ACGUGUAUCUCUACUACUCUAUAAG   2089 Target Full Sequence	0.0	PREDICTED: Zea mays probable fucosyltransferase 8 (LOC103631905), mRNA	NA	coding protein	psRNATarget
XM_020551812.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *|=||||||||||||||||||||* targets:224   UCUAUAUCUCUACUACUCUAUAAA   247 Target Full Sequence	1.0	PREDICTED: Zea mays Mediator of RNA polymerase II transcription subunit 36a (LOC103653057), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551813.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *|=||||||||||||||||||||* targets:15   UCUAUAUCUCUACUACUCUAUAAA   38 Target Full Sequence	1.0	PREDICTED: Zea mays Mediator of RNA polymerase II transcription subunit 36a (LOC103653057), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546132.1	ncRNA:24   UGGU--AUA-GAGAUGAUGAGAUAUUC   1   |=||--|||-||||||||||||||||| targets:2120   AUCAGUUAUUCUCUACUACUCUAUAAG   2146 Target Full Sequence	2.0	PREDICTED: Zea mays C2H2-type zinc finger family protein (LOC103641998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665307.2	ncRNA:24   UGGU--AUA-GAGAUGAUGAGAUAUUC   1   |=||--|||-||||||||||||||||| targets:1984   AUCAGUUAUUCUCUACUACUCUAUAAG   2010 Target Full Sequence	2.0	PREDICTED: Zea mays C2H2-type zinc finger family protein (LOC103641998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064188.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||||||||||||||||*| targets:770   UAUAUAUCUCUACUACUCUAUAUG   793 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0146L18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157482.2	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   ||=-|||||||||||||=|||||* targets:1738   ACU-UAUCUCUACUACUUUAUAAA   1760 Target Full Sequence	2.5	Zea mays protein binding protein (LOC100284587), mRNA	NA	coding protein	psRNATarget
XM_008679711.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *==|*||||=|||||||||||||| targets:482   CUUAAAUCUUUACUACUCUAUAAG   505 Target Full Sequence	1.0	PREDICTED: Zea mays SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (LOC103652744), mRNA	NA	coding protein	psRNATarget
XM_020552941.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   ==*|*||||||||||||||||||| targets:799   GUGAAAUCUCUACUACUCUAUAAG   822 Target Full Sequence	0.0	PREDICTED: Zea mays anthocyanidin 5,3-O-glucosyltransferase-like (LOC109946117), mRNA	NA	coding protein	psRNATarget
BT087329.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   =|=-||||*||||||||||||||| targets:252   GCU-UAUCCCUACUACUCUAUAAG   274 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0042F13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196666.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   =|=-||||*||||||||||||||| targets:252   GCU-UAUCCCUACUACUCUAUAAG   274 Target Full Sequence	1.0	Zea mays uncharacterized LOC100502189 (LOC100502189), mRNA	NA	coding protein	psRNATarget
XM_020539580.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *|=|-|||||||||||||||||*| targets:115   UCUA-AUCUCUACUACUCUAUAUG   137 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630434 (LOC103630434), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539579.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   *|=|-|||||||||||||||||*| targets:115   UCUA-AUCUCUACUACUCUAUAUG   137 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630434 (LOC103630434), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540771.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   |*||*||||=||||||||||||*| targets:299   AGCAAAUCUUUACUACUCUAUAUG   322 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103633278 (LOC103633278), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654980.2	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   |*||*||||=||||||||||||*| targets:299   AGCAAAUCUUUACUACUCUAUAUG   322 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103633278 (LOC103633278), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538375.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3854   UAUAUAUCCCUACUACUAUAUAAG   3877 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020538364.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3528   UAUAUAUCCCUACUACUAUAUAAG   3551 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020538370.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3644   UAUAUAUCCCUACUACUAUAUAAG   3667 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020538367.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3741   UAUAUAUCCCUACUACUAUAUAAG   3764 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538372.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3521   UAUAUAUCCCUACUACUAUAUAAG   3544 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020538356.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3344   UAUAUAUCCCUACUACUAUAUAAG   3367 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538360.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3247   UAUAUAUCCCUACUACUAUAUAAG   3270 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020538358.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3344   UAUAUAUCCCUACUACUAUAUAAG   3367 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538368.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3077   UAUAUAUCCCUACUACUAUAUAAG   3100 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538366.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:3019   UAUAUAUCCCUACUACUAUAUAAG   3042 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538365.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2996   UAUAUAUCCCUACUACUAUAUAAG   3019 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538359.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2680   UAUAUAUCCCUACUACUAUAUAAG   2703 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538357.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2622   UAUAUAUCCCUACUACUAUAUAAG   2645 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538369.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2562   UAUAUAUCCCUACUACUAUAUAAG   2585 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020538371.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2465   UAUAUAUCCCUACUACUAUAUAAG   2488 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020538373.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2342   UAUAUAUCCCUACUACUAUAUAAG   2365 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC103628191), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020538361.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:2068   UAUAUAUCCCUACUACUAUAUAAG   2091 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020538362.1	ncRNA:24   UGGUAUAGAGAUGAUGAGAUAUUC   1   **=|||||*||||||||*|||||| targets:1467   UAUAUAUCCCUACUACUAUAUAAG   1490 Target Full Sequence	2.5	PREDICTED: Zea mays DNA polymerase eta-like (LOC109939411), transcript variant X7, mRNA	NA	coding protein	psRNATarget