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BaseInfo

ncRNA ID	novel_zma_miR3291
Species	Zea mays
Class	miRNA
Genome position	Chr6:72338674-72338731 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	35 - GAUUGAAGGGGAUUAGAGAGGAAA - 58
Stem-loop(if miRNA)	--     A        A   -A      UA   GAUUG AGGGGAUU GAG  GGAAAU  G   ||||| |||||||| |||  ||||||   CUAAC UCCCCUAA CUC  CCUUUA  U CC     C        -   CA      CU
Stem-loop sequence	GAUUGAAGGGGAUUAGAGAGGAAAUUAGUUCAUUUCCACCUCAAUCCCCUCCAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ069159.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||||||*|||||||||||||| targets:56   UUUCCUCUCCAAUCCCCUUCAAUC   79 Target Full Sequence	1.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
XM_020543502.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||*=||||||||||||||=|||| targets:1768   UUUAUUCUCUAAUCCCCUUUAAUC   1791 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme family (LOC100194405), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:65   UUUCCCCCUUAAUCCCCUUCAAUC   88 Target Full Sequence	3.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:65   UUUCCCCCUUAAUCCCCUUCAAUC   88 Target Full Sequence	3.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:65   UUUCCCCCUUAAUCCCCUUCAAUC   88 Target Full Sequence	3.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EZ111591.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||||||**||||||||||||= targets:72   UUUCCUCUCCCAUCCCCUUCAAUU   95 Target Full Sequence	3.0	TSA: Zea mays contig47252, mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:819   UUUCCCCCUUAAUCCCCUUCAAUC   842 Target Full Sequence	3.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:858   UUUCCCCCUUAAUCCCCUUCAAUC   881 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:863   UUUCCCCCUUAAUCCCCUUCAAUC   886 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |||||*|*=||||||||||||||| targets:863   UUUCCCCCUUAAUCCCCUUCAAUC   886 Target Full Sequence	3.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AAA--GGAGAGA-UUAGGGGAAGUUAG   1   |||--=|||*||-|||||||||||||| targets:79   UUUAAUCUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	3.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AAA--GGAGAGA-UUAGGGGAAGUUAG   1   |||--=|||*||-|||||||||||||| targets:79   UUUAAUCUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	3.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AAA--GGAGAGA-UUAGGGGAAGUUAG   1   |||--=|||*||-|||||||||||||| targets:79   UUUAAUCUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	3.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |*|||||*|*|||||||||||||| targets:1021   UAUCCUCACCAAUCCCCUUCAAUC   1044 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AAAGGAGAGAUUAGGGGAAGUUAG   1   |******||*|||||||||||||| targets:131   UGGAAAAUCAAAUCCCCUUCAAUC   154 Target Full Sequence	3.0	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget