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BaseInfo

ncRNA ID osa-miR5158
Species Oryza sativa
Class miRNA
Genome position Chr8:23993370-23993635 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 231 - UGAGCCACUGGGAUGAGGAUGAAU - 254
Stem-loop(if miRNA) -----  A     A               -AU    GU    ---U  GG      A  GC    AA     UG           C  A  UC AU     C  A U                  -   -A     CA
     UC GAGUA UUCGUCCUCAUCCCA   GCUC  CAUC    AC  UUGGAA AA  CAUG  CUUUA  UGGCAUAACGG UC CC  U  GGGUA AC G GUGGAAGCGGACAAAGUC UCU  GCUCA  A
     || ||||| |||||||||||||||   ||||  ||||    ||  |||||| ||  ||||  |||||  ||||||||||| || ||  |  ||||| || | |||||||||||||||||| |||  |||||
     AG CUCAU AAGUAGGAGUAGGGU   CGAG  GUAG    UG  GACCUU UU  GUAC  GAAAU  GCCGUGUUGCC AG GG  A  UCCGU UG C CGCCUUCGCCUGUUUCAG AGA  UGAGU  A
ACAAC  C     -               CAC    UG    UAGU  UU      C  AA    GG     GU           A  A  UU CG     C  G U                  U   GG     AG
Stem-loop sequence UCAGAGUAAUUCGUCCUCAUCCCAAUGCUCGUCAUCUACGGUUGGAAAAAGCCAUGAACUUUAUGUGGCAUAACGGCUCACCUCUAUGGGUACACAGUGUGGAAGCGGACAAAGUCUCUAGCUCACAAAGAUGAGUGGAGAUGACUUUGUCCGCUUCCGCUCGGUCUGCCUGCAUUGGAGAACCGUUGUGCCGUGUAAAGGGCAUGAAUUCUUCCAGUUGUUGAUGAUGGUGAGCCACUGGGAUGAGGAUGAAUACUCCGACAACA

Reference

1 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).