ncRNA ID | osa-miR5158 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:23993370-23993635 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 231 - UGAGCCACUGGGAUGAGGAUGAAU - 254 |
Stem-loop(if miRNA) |
-----  A     A               -AU    GU    ---U  GG      A  GC    AA     UG           C  A  UC AU     C  A U                  -   -A     CA      UC GAGUA UUCGUCCUCAUCCCA   GCUC  CAUC    AC  UUGGAA AA  CAUG  CUUUA  UGGCAUAACGG UC CC  U  GGGUA AC G GUGGAAGCGGACAAAGUC UCU  GCUCA  A      || ||||| |||||||||||||||   ||||  ||||    ||  |||||| ||  ||||  |||||  ||||||||||| || ||  |  ||||| || | |||||||||||||||||| |||  |||||      AG CUCAU AAGUAGGAGUAGGGU   CGAG  GUAG    UG  GACCUU UU  GUAC  GAAAU  GCCGUGUUGCC AG GG  A  UCCGU UG C CGCCUUCGCCUGUUUCAG AGA  UGAGU  A ACAAC  C     -               CAC    UG    UAGU  UU      C  AA    GG     GU           A  A  UU CG     C  G U                  U   GG     AG |
Stem-loop sequence | UCAGAGUAAUUCGUCCUCAUCCCAAUGCUCGUCAUCUACGGUUGGAAAAAGCCAUGAACUUUAUGUGGCAUAACGGCUCACCUCUAUGGGUACACAGUGUGGAAGCGGACAAAGUCUCUAGCUCACAAAGAUGAGUGGAGAUGACUUUGUCCGCUUCCGCUCGGUCUGCCUGCAUUGGAGAACCGUUGUGCCGUGUAAAGGGCAUGAAUUCUUCCAGUUGUUGAUGAUGGUGAGCCACUGGGAUGAGGAUGAAUACUCCGACAACA |
1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |