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BaseInfo

ncRNA ID	novel_zma_miR3286
Species	Zea mays
Class	miRNA
Genome position	Chr6:119729572-119729655 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	61 - GUAGAUUGAGUGGGAUUGGGUGGG - 84
Stem-loop(if miRNA)	--        AG  G       ------------U   UUUAAAUCCU   GUAGAUUG  UG GAUUGGG             GGG          A   ||||||||  || |||||||             |||   UAUCUAAC  AC CUAACCU             UUC          A GG        CU  A       UUUUUAAUUUUUC   AAACUGAACA
Stem-loop sequence	GUAGAUUGAGUGGGAUUGGGUGGGUUUAAAUCCUAAACAAGUCAAACUUCUUUUUAAUUUUUUCCAAUCACAUCCAAUCUAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405889.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110 Target Full Sequence	1.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110 Target Full Sequence	1.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110 Target Full Sequence	1.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
AY112141.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||=|=||||=|||||||||||| targets:226   CUCAUCUAAUCUCACUCAAUCUAC   249 Target Full Sequence	2.5	Zea mays CL24213_1 mRNA sequence	NA	coding protein	psRNATarget
EZ064093.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |||||||||||||||||||||*|= targets:186   CCCACCCAAUCCCACUCAAUCCAU   209 Target Full Sequence	2.5	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
EU948930.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |*||||||||=||||||||||||| targets:418   CGCACCCAAUUCCACUCAAUCUAC   441 Target Full Sequence	1.0	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:743   CCCAUCCAAUCCCACUCAAUCCAC   766 Target Full Sequence	1.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:872   CCCAUCCAAUCCCACUCAAUCCAC   895 Target Full Sequence	1.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:174   CCCAUCCAAUCCCACUCAAUCCAC   197 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:526   CCCAUCCAAUCCCACUCAAUCCAC   549 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551 Target Full Sequence	1.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836 Target Full Sequence	1.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836 Target Full Sequence	1.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:2498   CCCAUCCAAUCCCACUCAAUCCAC   2521 Target Full Sequence	1.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |*||||||||=||||||||||||| targets:3130   CGCACCCAAUUCCACUCAAUCUAC   3153 Target Full Sequence	1.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1079   CCCAUCCAAUCCCACUCAAUCCAC   1102 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |*||||||||=||||||||||||| targets:3277   CGCACCCAAUUCCACUCAAUCUAC   3300 Target Full Sequence	1.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:1227   CCCAUCCAAUCCCACUCAAUCCAC   1250 Target Full Sequence	1.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||||=||||||||||||||||*|| targets:5802   CCCAUCCAAUCCCACUCAAUCCAC   5825 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
HI409007.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=|||||||||||||||||||*|= targets:71   CUCACCCAAUCCCACUCAAUCCAU   94 Target Full Sequence	2.5	Sequence 7132 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241137.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=|||||||||||||||||||*|= targets:71   CUCACCCAAUCCCACUCAAUCCAU   94 Target Full Sequence	2.5	Sequence 7132 from Patent EP2985353	NA	coding protein	psRNATarget
JB169468.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=|||||||||||||||||||*|= targets:71   CUCACCCAAUCCCACUCAAUCCAU   94 Target Full Sequence	2.5	Sequence 7132 from Patent EP2559767	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||=||||||||||||||||*|| targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101 Target Full Sequence	1.5	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||=||||||||||||||||*|| targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101 Target Full Sequence	1.5	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||=||||||||||||||||*|| targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101 Target Full Sequence	1.5	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||=||||||||||||||||*|| targets:118   CUCAUCCAAUCCCACUCAAUCCAC   141 Target Full Sequence	1.5	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||=||||||||||||||||*|| targets:2209   CUCAUCCAAUCCCACUCAAUCCAC   2232 Target Full Sequence	1.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:89   CUCAUUCAAUCCCACUCAAUCCAC   112 Target Full Sequence	2.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145 Target Full Sequence	2.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=||==|||||||||||||||*|| targets:1413   CUCAUUCAAUCCCACUCAAUCCAC   1436 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||*|=||||||||||||||||*|| targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||*|=||||||||||||||||*|| targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   ||*|=||||||||||||||||*|| targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   =|*||=|||||||||||||||*|| targets:4055   UCGACUCAAUCCCACUCAAUCCAC   4078 Target Full Sequence	2.5	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001349836.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=|-=|=||||||*|||||||||| targets:1409   CUC-UCUAAUCCCUCUCAAUCUAC   1431 Target Full Sequence	2.5	Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (LOC100193774), mRNA	NA	coding protein	psRNATarget
BT036132.1	ncRNA:24   GGGUGGGUUAGGGUGAGUUAGAUG   1   |=|-=|=||||||*|||||||||| targets:1466   CUC-UCUAAUCCCUCUCAAUCUAC   1488 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0097H18 mRNA, complete cds	NA	coding protein	psRNATarget