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BaseInfo

ncRNA ID	novel_zma_miR3285
Species	Zea mays
Class	miRNA
Genome position	Chr8:181015613-181015668 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	33 - UUUUUCUGUCUAAGAUUAGUUCUU - 56
Stem-loop(if miRNA)	UUUUUC       ---GA      -   UA       UGUCUAA     UUAGUU CUU  A       |||||||     |||||| |||       ACAGAUU     AAUCAG GAG  U --UGAA       AUUCC      C   CU
Stem-loop sequence	UUUUUCUGUCUAAGAUUAGUUCUUUAAUUCGAGCGACUAACCUUAUUAGACAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163656.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||||||||||||||||= targets:63   AAGAACUAAUCUUAGACAGAAAAG   86 Target Full Sequence	1.0	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||||||||||||||||= targets:63   AAGAACUAAUCUUAGACAGAAAAG   86 Target Full Sequence	1.0	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||||||||||||||||= targets:63   AAGAACUAAUCUUAGACAGAAAAG   86 Target Full Sequence	1.0	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
EZ052567.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||| targets:531   AAGAACUAACCUUAGACAGAAAAA   554 Target Full Sequence	1.0	TSA: Zea mays contig53688, mRNA sequence	NA	coding protein	psRNATarget
HI403358.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||| targets:63   AAGAACUAACCUUAGACAGAAAAA   86 Target Full Sequence	1.0	Sequence 1483 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235488.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||| targets:63   AAGAACUAACCUUAGACAGAAAAA   86 Target Full Sequence	1.0	Sequence 1483 from Patent EP2985353	NA	coding protein	psRNATarget
JB163819.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||| targets:63   AAGAACUAACCUUAGACAGAAAAA   86 Target Full Sequence	1.0	Sequence 1483 from Patent EP2559767	NA	coding protein	psRNATarget
EU964699.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||= targets:969   AAGAACUAACCUUAGACAGAAAAG   992 Target Full Sequence	2.0	Zea mays clone 280932 mRNA sequence	NA	coding protein	psRNATarget
XM_020541995.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||=|||||||| targets:479   AAGAACUAACCUUAGGCAGAAAAA   502 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (pco113764), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU959044.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||=|||||||| targets:465   AAGAACUAACCUUAGGCAGAAAAA   488 Target Full Sequence	2.5	Zea mays clone 209607 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001328519.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||=|||||||| targets:478   AAGAACUAACCUUAGGCAGAAAAA   501 Target Full Sequence	2.5	Zea mays hypothetical protein (pco113764), mRNA	NA	coding protein	psRNATarget
JB163902.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||=|||||||| targets:63   AAGAACUAACCUUAGGCAGAAAAA   86 Target Full Sequence	2.5	Sequence 1566 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235571.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||=|||||||| targets:63   AAGAACUAACCUUAGGCAGAAAAA   86 Target Full Sequence	2.5	Sequence 1566 from Patent EP2985353	NA	coding protein	psRNATarget
HI403441.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||=|||||||| targets:63   AAGAACUAACCUUAGGCAGAAAAA   86 Target Full Sequence	2.5	Sequence 1566 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235042.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||= targets:56   AAGAACUAAGCUUAGACAGAAAAG   79 Target Full Sequence	2.0	Sequence 1037 from Patent EP2985353	NA	coding protein	psRNATarget
HI402912.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||= targets:56   AAGAACUAAGCUUAGACAGAAAAG   79 Target Full Sequence	2.0	Sequence 1037 from Patent EP2074227	NA	coding protein	psRNATarget
JB163373.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*|||||||||||||= targets:56   AAGAACUAAGCUUAGACAGAAAAG   79 Target Full Sequence	2.0	Sequence 1037 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020538219.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||||||||=|||||||= targets:2399   AAUAACUAAUCUUAGGCAGAAAAG   2422 Target Full Sequence	2.5	PREDICTED: Zea mays Heterogeneous nuclear ribonucleoprotein 1 (LOC100382683), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU965288.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||||||||||||=|||= targets:910   AAUAACUAAUCUUAGACAGGAAAG   933 Target Full Sequence	2.5	Zea mays clone 285047 zinc finger, C3HC4 type family protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084085.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||*=||||||||||||= targets:354   AAGAACUAACUUUAGACAGAAAAG   377 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0072B06 mRNA, complete cds	NA	coding protein	psRNATarget
JB163482.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   =||||||||*|||||||||||||= targets:59   GAGAACUAAGCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1146 from Patent EP2559767	NA	coding protein	psRNATarget
HI403021.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   =||||||||*|||||||||||||= targets:59   GAGAACUAAGCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1146 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235151.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   =||||||||*|||||||||||||= targets:59   GAGAACUAAGCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1146 from Patent EP2985353	NA	coding protein	psRNATarget
BT053849.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   =||||||||*||||||||*||||| targets:1711   GAGAACUAACCUUAGACAAAAAAA   1734 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0307M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU961872.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||**||||||||||||= targets:1408   AAGAACUAAGGUUAGACAGAAAAG   1431 Target Full Sequence	3.0	Zea mays clone 238809 mRNA sequence	NA	coding protein	psRNATarget
XM_008673397.2	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||**||||||||||||= targets:66   AAGAACUAAGGUUAGACAGAAAAG   89 Target Full Sequence	3.0	PREDICTED: Zea mays adenylate isopentenyltransferase 5, chloroplastic (LOC103649047), mRNA	NA	coding protein	psRNATarget
BT088093.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:663   AAUAACUAACCUUAGACAGAAAAG   686 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158867.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:682   AAUAACUAACCUUAGACAGAAAAG   705 Target Full Sequence	2.0	Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA	NA	coding protein	psRNATarget
EU974994.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:682   AAUAACUAACCUUAGACAGAAAAG   705 Target Full Sequence	2.0	Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||||||||*|||||||= targets:203   AAAAACUAAUCUUAGUCAGAAAAG   226 Target Full Sequence	2.5	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
EZ097983.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   |||||||||**||||||||||||= targets:120   AAGAACUAAGAUUAGACAGAAAAG   143 Target Full Sequence	3.0	TSA: Zea mays contig33638, mRNA sequence	NA	coding protein	psRNATarget
JB163606.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:59   AAAAACUAACCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1270 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235153.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:59   AAAAACUAACCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1148 from Patent EP2985353	NA	coding protein	psRNATarget
JB163484.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:59   AAAAACUAACCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1148 from Patent EP2559767	NA	coding protein	psRNATarget
HI403023.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:59   AAAAACUAACCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1148 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235275.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:59   AAAAACUAACCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1270 from Patent EP2985353	NA	coding protein	psRNATarget
HI403145.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*|||||||||||||= targets:59   AAAAACUAACCUUAGACAGAAAAG   82 Target Full Sequence	2.0	Sequence 1270 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008667122.2	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:90   AAUAACUAACUUUAGACAGAAAAG   113 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546911.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:90   AAUAACUAACUUUAGACAGAAAAG   113 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:90   AAUAACUAACUUUAGACAGAAAAG   113 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:90   AAUAACUAACUUUAGACAGAAAAG   113 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001156027.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:1632   AAUAACUAACUUUAGACAGAAAAG   1655 Target Full Sequence	3.0	Zea mays uncharacterized LOC100283125 (pco080956), mRNA	NA	coding protein	psRNATarget
EU963506.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:1632   AAUAACUAACUUUAGACAGAAAAG   1655 Target Full Sequence	3.0	Zea mays clone 263419 COP9 signalosome complex subunit 3 mRNA, complete cds	NA	coding protein	psRNATarget
EU945747.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||*||||||*=||||||||||||= targets:151   AAUAACUAACUUUAGACAGAAAAG   174 Target Full Sequence	3.0	Zea mays clone 284493 mRNA sequence	NA	coding protein	psRNATarget
HI406748.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||||-||||||||||*|||||||= targets:53   AAGA-CUAAUCUUAGCCAGAAAAG   75 Target Full Sequence	2.5	Sequence 4873 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238878.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||||-||||||||||*|||||||= targets:53   AAGA-CUAAUCUUAGCCAGAAAAG   75 Target Full Sequence	2.5	Sequence 4873 from Patent EP2985353	NA	coding protein	psRNATarget
JB167209.1	ncRNA:24   UUCUUGAUUAGAAUCUGUCUUUUU   1   ||||-||||||||||*|||||||= targets:53   AAGA-CUAAUCUUAGCCAGAAAAG   75 Target Full Sequence	2.5	Sequence 4873 from Patent EP2559767	NA	coding protein	psRNATarget