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BaseInfo

ncRNA ID	novel_zma_miR3284
Species	Zea mays
Class	miRNA
Genome position	Chr10:115042394-115042475 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	21
Mature sequence(if miRNA)	1 - AGAGGGGGAUUGAAGGGGAUU - 21
Stem-loop(if miRNA)	--                  A           C       A   AGAGGGGGAUUGAAGGGG UUAAAUCCCCU CUAGUCA A   |||||||||||||||||| ||||||||||| |||||||   UCUCCCCCUAACUUCCCC AAUUUAGGGGA GAUCAGU A GG                  A           A       A
Stem-loop sequence	AGAGGGGGAUUGAAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUGACUAGAAGGGGAUUUAAACCCCUUCAAUCCCCCUCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238167.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:92   AAUCCCCUUCAAUCCCCCUCA   112 Target Full Sequence	1.0	Sequence 4162 from Patent EP2985353	NA	coding protein	psRNATarget
JB166498.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:92   AAUCCCCUUCAAUCCCCCUCA   112 Target Full Sequence	1.0	Sequence 4162 from Patent EP2559767	NA	coding protein	psRNATarget
HI406037.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:92   AAUCCCCUUCAAUCCCCCUCA   112 Target Full Sequence	1.0	Sequence 4162 from Patent EP2074227	NA	coding protein	psRNATarget
EU960473.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:99   AAUCCCCUUCAAUCCCCCUCA   119 Target Full Sequence	1.0	Zea mays clone 225209 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963775.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:232   AAUCCCCUUCAAUCCCCCUCA   252 Target Full Sequence	1.0	Zea mays clone 272562 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942334.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:240   AAUCCCCUUCAAUCCCCCUCA   260 Target Full Sequence	1.0	Zea mays clone 1480331 mRNA sequence	NA	coding protein	psRNATarget
EU961196.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:374   AAUCCCCUUCAAUCCCCCUCA   394 Target Full Sequence	1.0	Zea mays clone 233383 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001245881.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:758   AAUCCCCUUCAAUCCCCCUCA   778 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
EU964415.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:758   AAUCCCCUUCAAUCCCCCUCA   778 Target Full Sequence	1.0	Zea mays clone 278711 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069598.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:853   AAUCCCCUUCAAUCCCCCUCA   873 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0180C20 mRNA, complete cds	NA	coding protein	psRNATarget
BT069064.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:821   AAUCCCCUUCAAUCCCCCUCA   841 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065224.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:804   AAUCCCCUUCAAUCCCCCUCA   824 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds	NA	coding protein	psRNATarget
BT062705.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:859   AAUCCCCUUCAAUCCCCCUCA   879 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150473.2	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:859   AAUCCCCUUCAAUCCCCCUCA   879 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
XM_008678753.2	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:904   AAUCCCCUUCAAUCCCCCUCA   924 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964521.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||||||* targets:920   AAUCCCCUUCAAUCCCCCUCA   940 Target Full Sequence	1.0	Zea mays clone 279503 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||||||||||=|||* targets:189   AAUCCCCUUCAAUCCCUCUCA   209 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:19   AGGGGAAGUUAGGGGGAGA   1   |||||||||||||||=||| targets:1   UCCCCUUCAAUCCCCUUCU   19 Target Full Sequence	1.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||*|||||||||||||||||* targets:841   AAACCCCUUCAAUCCCCCUCA   861 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||*|||||||||||* targets:3271   AAUCCCCUCCAAUCCCCCUCA   3291 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||*|||||||||||* targets:1592   AAUCCCCUCCAAUCCCCCUCA   1612 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||||||||*|||||||||||* targets:1592   AAUCCCCUCCAAUCCCCCUCA   1612 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||*|||||*|||||||||||| targets:1602   AAACCCCUCCAAUCCCCCUCU   1622 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   **|||||||||||||||=||* targets:230   UUUCCCCUUCAAUCCCCUUCA   250 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:21   UUAGGGGAAGUUAGGGGGAGA   1   ||*||||*||||||||||||* targets:1961   AAACCCCCUCAAUCCCCCUCA   1981 Target Full Sequence	3.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget