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BaseInfo

ncRNA ID	novel_zma_miR3283
Species	Zea mays
Class	miRNA
Genome position	Chr8:179423212-179423266 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUUUCUAUUUUCCUAAGGGAAAUU - 24
Stem-loop(if miRNA)	--               A      UUA   AUUUCUAUUUUCCUA GGGAAA   G   ||||||||||||||| ||||||   U   UAAAGAUAAAAGGGU CCCUUU   U CU               A      UAU
Stem-loop sequence	AUUUCUAUUUUCCUAAGGGAAAUUAGUUUAUUUUCCCAUGGGAAAAUAGAAAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU957492.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||=||||||||||||| targets:1746   AAUUUCCCUUGGGAAAAUAGAAAU   1769 Target Full Sequence	1.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
BT055900.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |||||==||||||||||||||||| targets:1397   AAUUUUUCUUAGGAAAAUAGAAAU   1420 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0026G06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153204.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |||||==||||||||||||||||| targets:1397   AAUUUUUCUUAGGAAAAUAGAAAU   1420 Target Full Sequence	2.0	Zea mays Omega-amidase chloroplastic (LOC100280276), mRNA	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||=||||||||*|||| targets:971   AAUUUCCCUUGGGAAAAUAAAAAU   994 Target Full Sequence	2.5	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||=||||||||*|||| targets:124   AAUUUCCCUUGGGAAAAUAAAAAU   147 Target Full Sequence	2.5	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |*|||=||||=||||||||||||| targets:804   AUUUUUCCUUGGGAAAAUAGAAAU   827 Target Full Sequence	2.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ071949.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||=|||||||||=||| targets:114   AUUUUCCCUUGGGAAAAUAGGAAU   137 Target Full Sequence	2.5	TSA: Zea mays contig07586, mRNA sequence	NA	coding protein	psRNATarget
XM_008646834.2	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |*|||=||*||||||||||||||| targets:4166   AUUUUUCCAUAGGAAAAUAGAAAU   4189 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||*|||||||||=||| targets:422   AUUUUCCCUUUGGAAAAUAGGAAU   445 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||=||||||*|||||| targets:742   AUUUUCCCUUGGGAAAACAGAAAU   765 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
EU960273.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||=||||||*|||||| targets:742   AUUUUCCCUUGGGAAAACAGAAAU   765 Target Full Sequence	2.5	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962992.1	ncRNA:24   UUAAAGGGAAUCCUUUUAUCUUUA   1   ||*||=*=|||||||||||||||| targets:436   AACUUUGUUUAGGAAAAUAGAAAU   459 Target Full Sequence	3.0	Zea mays clone 247109 cytochrome c oxidase copper chaperone mRNA, complete cds	NA	coding protein	psRNATarget