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BaseInfo

ncRNA ID	novel_zma_miR3282
Species	Zea mays
Class	miRNA
Genome position	Chr6:142524492-142524612 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR1997865
Length	24
Mature sequence(if miRNA)	1 - AGGGCUAGUUUGGCAACACUAUUU - 24
Stem-loop(if miRNA)	--             C   A           C   A     AA              AUG   AGGGCUAGUUUGG AAC CUAUUUUUCCA GGG UUUUC  UUUUCCAAGGGAAA   A   ||||||||||||| ||| ||||||||||| ||| |||||  ||||||||||||||   A   UCCCGAUCAAACU UUG GAUAAAAGGGU CCC AAAAG  AAAGGGUUCCCUUU   C AA             U   G           U   C     CA              AAU
Stem-loop sequence	AGGGCUAGUUUGGCAACACUAUUUUUCCACGGGAUUUUCAAUUUUCCAAGGGAAAAUGAACUAAUUUCCCUUGGGAAAACGAAAACCCCUUGGGAAAAUAGGGUUUUCAAACUAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680878.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||||||||||||||||||||||| targets:1604   AAAUAGUGUUGCCAAACUAGCCCU   1627 Target Full Sequence	0.0	PREDICTED: Zea mays E3 ubiquitin protein ligase RIE1 (LOC103654076), mRNA	NA	coding protein	psRNATarget
JB167484.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||||||||||||||=| targets:102   AAAUGGUGUUGCCAAACUAGCCUU   125 Target Full Sequence	1.5	Sequence 5148 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239153.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||||||||||||||=| targets:102   AAAUGGUGUUGCCAAACUAGCCUU   125 Target Full Sequence	1.5	Sequence 5148 from Patent EP2985353	NA	coding protein	psRNATarget
HI407023.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||||||||||||||=| targets:102   AAAUGGUGUUGCCAAACUAGCCUU   125 Target Full Sequence	1.5	Sequence 5148 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	1.0	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
HI406263.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	1.0	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	1.0	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
EU947368.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:324   AAAUGGUGUUACCAAACUAGCCCU   347 Target Full Sequence	1.0	Zea mays clone 341178 mRNA sequence	NA	coding protein	psRNATarget
AY110835.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||||*||||||||||| targets:38   AAAUGGUGUUGCAAAACUAGCCCU   61 Target Full Sequence	1.5	Zea mays CL46086_1 mRNA sequence	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:1447   AAAUGGUGUUCCCAAACUAGCCCU   1470 Target Full Sequence	1.0	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|||||*||||||||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	1.0	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*||||||||||||||||| targets:1503   AAAUGGGGUUGCCAAACUAGCCCU   1526 Target Full Sequence	1.0	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
XM_020542483.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=*|||||||||||||||||| targets:3186   AAAUGCUGUUGCCAAACUAGCCCU   3209 Target Full Sequence	1.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542482.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=*|||||||||||||||||| targets:3675   AAAUGCUGUUGCCAAACUAGCCCU   3698 Target Full Sequence	1.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542481.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=*|||||||||||||||||| targets:3687   AAAUGCUGUUGCCAAACUAGCCCU   3710 Target Full Sequence	1.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542480.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=*|||||||||||||||||| targets:3723   AAAUGCUGUUGCCAAACUAGCCCU   3746 Target Full Sequence	1.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:1470   AAAUUAGUGUUCCCAAACUAGCCCU   1494 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:1513   AAAUUAGUGUUCCCAAACUAGCCCU   1537 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:1514   AAAUUAGUGUUCCCAAACUAGCCCU   1538 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:1557   AAAUUAGUGUUCCCAAACUAGCCCU   1581 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:1643   AAAUUAGUGUUCCCAAACUAGCCCU   1667 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665186.2	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:1   AAAUUAGUGUUCCCAAACUAGCCCU   25 Target Full Sequence	1.0	PREDICTED: Zea mays probable galacturonosyltransferase-like 3 (LOC103641870), mRNA	NA	coding protein	psRNATarget
BT018700.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1222   AAAUAGGGUUGCCAAACUAGCCAU   1245 Target Full Sequence	2.5	Zea mays clone EL01N0515A01.d mRNA sequence	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||*||||||||||||| targets:1306   AAAUAGGGUUUCCAAACUAGCCCU   1329 Target Full Sequence	2.0	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
NM_001175321.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1152   AAAUAGGGUUGCCAAACUAGCCAU   1175 Target Full Sequence	2.5	Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT064838.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1152   AAAUAGGGUUGCCAAACUAGCCAU   1175 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0201G15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548086.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||*||| targets:1324   AAAUAGGGUUGCCAAACUAGACCU   1347 Target Full Sequence	2.5	PREDICTED: Zea mays protein PELOTA 1 (LOC103645815), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551310.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1093   AAAUAGGGUUGCCAAACUAGCCAU   1116 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020551308.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1260   AAAUAGGGUUGCCAAACUAGCCAU   1283 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678410.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1339   AAAUAGGGUUGCCAAACUAGCCAU   1362 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001139247.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1320   AAAUAGGGUUGCCAAACUAGCCAU   1343 Target Full Sequence	2.5	Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 1, mRNA	NA	coding protein	psRNATarget
XM_020551309.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||||*| targets:1184   AAAUAGGGUUGCCAAACUAGCCAU   1207 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001351109.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||||*|||||||||||||*||| targets:1580   AAAUAGGGUUGCCAAACUAGACCU   1603 Target Full Sequence	2.5	Zea mays protein PELOTA 1 (LOC103645815), mRNA	NA	coding protein	psRNATarget
XM_020540939.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||*||*||||||||||||||||| targets:3819   AAACAGAGUUGCCAAACUAGCCCU   3842 Target Full Sequence	1.0	PREDICTED: Zea mays leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (LOC109940759), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU947743.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*||||||||||||||*|| targets:118   AAAUGGGGUUGCCAAACUAGCACU   141 Target Full Sequence	2.5	Zea mays clone 356079 mRNA sequence	NA	coding protein	psRNATarget
EU951374.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*|||*||||||||||||| targets:414   AAAUGGGGUUUCCAAACUAGCCCU   437 Target Full Sequence	2.0	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
EU949735.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*||||||||||||||*|| targets:169   AAAUGGGGUUGCCAAACUAGCACU   192 Target Full Sequence	2.5	Zea mays clone 442739 mRNA sequence	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||*||||||*=|||||||||||| targets:609   AAACAGUGUUCUCAAACUAGCCCU   632 Target Full Sequence	2.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
EU960700.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*|||||||||||*||||| targets:2   AAAUGGGGUUGCCAAACUUGCCCU   25 Target Full Sequence	2.5	Zea mays clone 227687 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540400.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**|||||||||||||||| targets:633   AAAUGGGUUUGCCAAACUAGCCCU   656 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020540401.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**|||||||||||||||| targets:661   AAAUGGGUUUGCCAAACUAGCCCU   684 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020540399.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**|||||||||||||||| targets:957   AAAUGGGUUUGCCAAACUAGCCCU   980 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020540398.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**|||||||||||||||| targets:1113   AAAUGGGUUUGCCAAACUAGCCCU   1136 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020540395.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**|||||||||||||||| targets:1126   AAAUGGGUUUGCCAAACUAGCCCU   1149 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540396.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**|||||||||||||||| targets:1441   AAAUGGGUUUGCCAAACUAGCCCU   1464 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*|||*||||||||||||| targets:455   AAAUGGAGUUCCCAAACUAGCCCU   478 Target Full Sequence	2.0	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*|||*||||||||||||| targets:2559   AAAUGGAGUUCCCAAACUAGCCCU   2582 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*|||*||||||||||||| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ112868.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:149   AAAUUGGAGUUGCUAAACUAGCCCU   173 Target Full Sequence	2.5	TSA: Zea mays contig48529, mRNA sequence	NA	coding protein	psRNATarget
BT065169.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1139   AAAUUGGAGUUGCUAAACUAGCCCU   1163 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0015J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674764.2	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1142   AAAUUGGAGUUGCUAAACUAGCCCU   1166 Target Full Sequence	2.5	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT037070.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1224   AAAUUGGAGUUGCUAAACUAGCCCU   1248 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157788.2	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1236   AAAUUGGAGUUGCUAAACUAGCCCU   1260 Target Full Sequence	2.5	Zea mays stress regulated protein (LOC100284893), mRNA	NA	coding protein	psRNATarget
EU970039.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1237   AAAUUGGAGUUGCUAAACUAGCCCU   1261 Target Full Sequence	2.5	Zea mays clone 338909 stress regulated protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064672.1	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1343   AAAUUGGAGUUGCUAAACUAGCCCU   1367 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008O01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674763.2	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-=|*|||||=||||||||||| targets:1332   AAAUUGGAGUUGCUAAACUAGCCCU   1356 Target Full Sequence	2.5	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545978.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:709   AAAU-GAGUUGCCAAACUAGCUCU   731 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100303977 (LOC100303977), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545979.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:710   AAAU-GAGUUGCCAAACUAGCUCU   732 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100303977 (LOC100303977), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545753.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:967   AAAU-GAGUUGCCAAACUAGCUCU   989 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_008665037.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:972   AAAU-GAGUUGCCAAACUAGCUCU   994 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665038.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:974   AAAU-GAGUUGCCAAACUAGCUCU   996 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT034838.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||*=|||||*=|||||||||||| targets:1479   AAACGGUGUUUUCAAACUAGCCCU   1502 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022H04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137966.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||*=|||||*=|||||||||||| targets:1479   AAACGGUGUUUUCAAACUAGCCCU   1502 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192770 (pco077380), mRNA	NA	coding protein	psRNATarget
XM_008665040.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:1666   AAAU-GAGUUGCCAAACUAGCUCU   1688 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020545752.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||-|*||||||||||||||=|| targets:2287   AAAU-GAGUUGCCAAACUAGCUCU   2309 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008675357.2	ncRNA:24   UUUA-UCACAACGGUUUGAUCGGGA   1   ||||-||||||*|||||||||*||| targets:204   AAAUUAGUGUUCCCAAACUAGGCCU   228 Target Full Sequence	2.5	PREDICTED: Zea mays UNE1 (LOC103649618), mRNA	NA	coding protein	psRNATarget
AF023159.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*|||*||||||||||||* targets:5579   AAAUGGGGUUCCCAAACUAGCCCG   5602 Target Full Sequence	3.0	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
BT084259.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||*|*|||*||||||||||||| targets:1009   AAAUUGAGUUCCCAAACUAGCCCU   1032 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU967093.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||*|*|||*||||||||||||| targets:1005   AAAUUGAGUUCCCAAACUAGCCCU   1028 Target Full Sequence	2.0	Zea mays clone 299427 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150806.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||*|*|||*||||||||||||| targets:1055   AAAUUGAGUUCCCAAACUAGCCCU   1078 Target Full Sequence	2.0	Zea mays Tyrosine specific protein phosphatase-like (LOC100277156), mRNA	NA	coding protein	psRNATarget
NM_001148737.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||||**|||*||||||||||||| targets:1263   AAAUAUAGUUUCCAAACUAGCCCU   1286 Target Full Sequence	3.0	Zea mays 3-beta hydroxysteroid dehydrogenase/isomerase family protein (LOC100274377), mRNA	NA	coding protein	psRNATarget
BT042884.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||||**|||*||||||||||||| targets:1263   AAAUAUAGUUUCCAAACUAGCCCU   1286 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0056M09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676590.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||||**|||*||||||||||||| targets:4095   AAAUAUAGUUUCCAAACUAGCCCU   4118 Target Full Sequence	3.0	PREDICTED: Zea mays Asparagine synthase family protein (si683017d09), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*||**||||||||||||| targets:7   AAAUGGAGUCUCCAAACUAGCCCU   30 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
BT042415.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ******|||||||||||||||||| targets:1183   UCCAUUUGUUGCCAAACUAGCCCU   1206 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0224H05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547560.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ******|||||||||||||||||| targets:1273   UCCAUUUGUUGCCAAACUAGCCCU   1296 Target Full Sequence	1.0	PREDICTED: Zea mays DNAJ heat shock N-terminal domain-containing protein (LOC100274132), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544055.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**||*||||||||||||| targets:1888   AAAUGGGAUUUCCAAACUAGCCCU   1911 Target Full Sequence	3.0	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662239.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|**||*||||||||||||| targets:1908   AAAUGGGAUUUCCAAACUAGCCCU   1931 Target Full Sequence	3.0	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*||**||||||||||||| targets:1177   AAAUGGAGUCUCCAAACUAGCCCU   1200 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   ||||=|*||**||||||||||||| targets:1177   AAAUGGAGUCUCCAAACUAGCCCU   1200 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652775.2	ncRNA:24   UUUAUCACAACGGUUUGAUCGGGA   1   |||*=|||||*|||||*||||||| targets:15   AAACGGUGUUCCCAAAGUAGCCCU   38 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100217039 (LOC100217039), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ068772.1	ncRNA:24   UUUA---UCAC-AACGGUUUGAUCGGGA   1   =|=|---||||-||*||||||||||||| targets:43   GAGUUAGAGUGGUUUCCAAACUAGCCCU   70 Target Full Sequence	3.0	TSA: Zea mays contig04407, mRNA sequence	NA	coding protein	psRNATarget