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BaseInfo

ncRNA ID	novel_zma_miR3272
Species	Zea mays
Class	miRNA
Genome position	Chr5:72060519-72060584 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089698;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - GGAGGAUUGGAGGGGAUUGAGGGA - 24
Stem-loop(if miRNA)	--                       A     GA   GGAGGAUUGGAGGGGAUUGAGGG GAAAU  A   ||||||||||||||||||||||| |||||   CCUCCUAGCCUCCCCUAACUCCC CUUUA  C GC                       C     AU
Stem-loop sequence	GGAGGAUUGGAGGGGAUUGAGGGAGAAAUGAACUAAUUUCCCCCUCAAUCCCCUCCGAUCCUCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088155.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ||=||||||||||||||||||||| targets:1465   UCUCUCAAUCCCCUCCAAUCCUCC   1488 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||||||||||||||||||||| targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	0.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||||||||||||||||||||| targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	0.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||||||||||||||||||||| targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	0.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   |||||=|||||||||||||||||= targets:79   UCCCUUAAUCCCCUCCAAUCCUCU   102 Target Full Sequence	2.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AG-GGAGUUAGGGGAGGUUAGGAGG   1   ||-|||||||||||||||||||||| targets:76   UCACCUCAAUCCCCUCCAAUCCUCC   100 Target Full Sequence	0.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AG-GGAGUUAGGGGAGGUUAGGAGG   1   ||-|||||||||||||||||||||| targets:42   UCACCUCAAUCCCCUCCAAUCCUCC   66 Target Full Sequence	0.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AG-GGAGUUAGGGGAGGUUAGGAGG   1   ||-||||||||||||||||||||=| targets:31   UCUCCUCAAUCCCCUCCAAUCCUUC   55 Target Full Sequence	1.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AG-GGAGUUAGGGGAGGUUAGGAGG   1   ||-||||||||||||||||||||=| targets:31   UCUCCUCAAUCCCCUCCAAUCCUUC   55 Target Full Sequence	1.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AG-GGAGUUAGGGGAGGUUAGGAGG   1   ||-||||||||||||||||||||=| targets:31   UCUCCUCAAUCCCCUCCAAUCCUUC   55 Target Full Sequence	1.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *|||||||||||||||=||||||| targets:2152   CCCCUCAAUCCCCUCCGAUCCUCC   2175 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   AGG--GAGUUAGGGGAGGUUAGGAGG   1   |||--|||||||||||||=||||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCUCC   79 Target Full Sequence	1.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   AGG--GAGUUAGGGGAGGUUAGGAGG   1   |||--|||||||||||||=||||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCUCC   79 Target Full Sequence	1.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   AGG--GAGUUAGGGGAGGUUAGGAGG   1   |||--|||||||||||||=||||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCUCC   79 Target Full Sequence	1.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:69   CCCCUUAAUCCCCUUCAAUCCUCC   92 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:69   CCCCUUAAUCCCCUUCAAUCCUCC   92 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:69   CCCCUUAAUCCCCUUCAAUCCUCC   92 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:823   CCCCUUAAUCCCCUUCAAUCCUCC   846 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:862   CCCCUUAAUCCCCUUCAAUCCUCC   885 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:867   CCCCUUAAUCCCCUUCAAUCCUCC   890 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *||||=||||||||=||||||||| targets:867   CCCCUUAAUCCCCUUCAAUCCUCC   890 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *=|||||||=||||||=||||||| targets:1849   CUCCUCAAUUCCCUCCGAUCCUCC   1872 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *=|||||||=||||||=||||||| targets:2287   CUCCUCAAUUCCCUCCGAUCCUCC   2310 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ||*||||||||||||||||||*|| targets:72   UCACUCAAUCCCCUCCAAUCCCCC   95 Target Full Sequence	1.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ||*||||||||||||||||||*|| targets:72   UCACUCAAUCCCCUCCAAUCCCCC   95 Target Full Sequence	1.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ||*||||||||||||||||||*|| targets:72   UCACUCAAUCCCCUCCAAUCCCCC   95 Target Full Sequence	1.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
HI403300.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ****||||||||=||||||||||| targets:33   AGGAUCAAUCCCUUCCAAUCCUCC   56 Target Full Sequence	1.5	Sequence 1425 from Patent EP2074227	NA	coding protein	psRNATarget
JB163761.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ****||||||||=||||||||||| targets:33   AGGAUCAAUCCCUUCCAAUCCUCC   56 Target Full Sequence	1.5	Sequence 1425 from Patent EP2559767	NA	coding protein	psRNATarget
JB163888.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ****||||||||=||||||||||| targets:33   AGGAUCAAUCCCUUCCAAUCCUCC   56 Target Full Sequence	1.5	Sequence 1552 from Patent EP2559767	NA	coding protein	psRNATarget
HI403427.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ****||||||||=||||||||||| targets:33   AGGAUCAAUCCCUUCCAAUCCUCC   56 Target Full Sequence	1.5	Sequence 1552 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235557.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ****||||||||=||||||||||| targets:33   AGGAUCAAUCCCUUCCAAUCCUCC   56 Target Full Sequence	1.5	Sequence 1552 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235430.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ****||||||||=||||||||||| targets:33   AGGAUCAAUCCCUUCCAAUCCUCC   56 Target Full Sequence	1.5	Sequence 1425 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   *|==|||||||||||||||*|||= targets:1329   ACUUUCAAUCCCCUCCAAUACUCU   1352 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
EU941263.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   |=|=||*||||||||||*|||||| targets:359   UUCUUCCAUCCCCUCCACUCCUCC   382 Target Full Sequence	2.5	Zea mays clone 1435006 mRNA sequence	NA	coding protein	psRNATarget
EU946012.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   |=|=||*||||||||||*|||||| targets:530   UUCUUCCAUCCCCUCCACUCCUCC   553 Target Full Sequence	2.5	Zea mays clone 293445 mRNA sequence	NA	coding protein	psRNATarget
XM_020553205.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   ||||-|*=|||||||||||||||| targets:52   UCCC-CUGUCCCCUCCAAUCCUCC   74 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100275420 (LOC100275420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964952.1	ncRNA:24   AGGGAGUUAGGGGAGGUUAGGAGG   1   **|*|=||||=||||||||||||| targets:13   GGCAUUAAUCUCCUCCAAUCCUCC   36 Target Full Sequence	2.0	Zea mays clone 282757 proteasome subunit alpha type 7 mRNA, complete cds	NA	coding protein	psRNATarget