Search result

BaseInfo

ncRNA ID	novel_zma_miR3264
Species	Zea mays
Class	miRNA
Genome position	Chr8:13641472-13641523 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647390
Length	24
Mature sequence(if miRNA)	29 - GACUAGGAGGGGAUUUAAUCCUCU - 52
Stem-loop(if miRNA)	--   U          GU       U   GGG UUAAAUCCCC  CUAGUCA U   ||| ||||||||||  |||||||   UCC AAUUUAGGGG  GAUCAGU U UC   U          AG       U
Stem-loop sequence	GGGUUUAAAUCCCCGUCUAGUCAUUUUUGACUAGGAGGGGAUUUAAUCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670947.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||=||||||||||||=|||||||| targets:604   AGGGGAUUAAAUCCCUUCCUAGUC   627 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA	NA	coding protein	psRNATarget
BT063242.2	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||||||||*||||||||=|||||| targets:501   AGAGGAUUUAAUCCCCUUCUAGUC   524 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0042E19 mRNA, complete cds	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||=||||||||||||||||||*|= targets:29   AGGGGAUUAAAUCCCCUCCUAUUU   52 Target Full Sequence	2.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||=||||||||||||||||||*|= targets:3225   AGGGGAUUAAAUCCCCUCCUAUUU   3248 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||||||||*|||||||*||||||| targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||||||||*|||||||*||||||| targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||||||||*|||||||*||||||| targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
EU950695.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||-||||||||||||=|||||||= targets:611   AG-GGAUUAAAUCCCUUCCUAGUU   633 Target Full Sequence	2.5	Zea mays clone 509921 mRNA sequence	NA	coding protein	psRNATarget
EZ095217.1	ncRNA:24   UCUCCUAAUUUAGGGGAGGAUCAG   1   ||=||*||||||||||*||||||| targets:73   AGGGGUUUAAAUCCCCGCCUAGUC   96 Target Full Sequence	2.5	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget