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BaseInfo

ncRNA ID novel_zma_miR3262
Species Zea mays
Class miRNA
Genome position Chr5:135678815-135678933 [-]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 1 - GCCACAGCAAACCGUUAGGACGUA - 24
Stem-loop(if miRNA) --           G          U           C    A  AAGGAG   GAA G U
  CGUUCUAACGG UUGCUGUGGC CACAUGUUAGU GUCG GG      GGA   G G G
  ||||||||||| |||||||||| ||||||||||| |||| ||      |||   | |
  GCAGGAUUGCC AACGACACCG GUGUACAGUUA CAGU CC      CCU   C C G
AU           A          C           A    A  AGAUAA   -GG G A
Stem-loop sequence CGUUCUAACGGGUUGCUGUGGCUCACAUGUUAGUCGUCGAGGAAGGAGGGAGAAGGGUGGACGCGGUCCAAUAGACCAUGACAAUUGACAUGUGCGCCACAGCAAACCGUUAGGACGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT036237.1
ncRNA:24   AU--GCAGGAUUGCCAAACGACACCG   1
  ||--=||=||*|=|||||||||||||
targets:1213   UAACUGUUCUUAUGGUUUGCUGUGGC   1238

3.0 Zea mays full-length cDNA clone ZM_BFb0102A22 mRNA, complete cds NA coding protein psRNATarget
NM_001138941.2
ncRNA:24   AU--GCAGGAUUGCCAAACGACACCG   1
  ||--=||=||*|=|||||||||||||
targets:1213   UAACUGUUCUUAUGGUUUGCUGUGGC   1238

3.0 Zea mays Chaperone DnaJ-domain superfamily protein (LOC100193861), mRNA NA coding protein psRNATarget
EU949778.1
ncRNA:24   AU--GCAGGAUUGCCAAACGACACCG   1
  ||--=||=||*|=|||||||||||||
targets:1161   UAACUGUUCUUAUGGUUUGCUGUGGC   1186

3.0 Zea mays clone 444677 mRNA sequence NA coding protein psRNATarget
EU969984.1
ncRNA:24   AU--GCAGGAUUGCCAAACGACACCG   1
  ||--=||=||*|=|||||||||||||
targets:1256   UAACUGUUCUUAUGGUUUGCUGUGGC   1281

3.0 Zea mays clone 338121 heat shock protein binding protein mRNA, complete cds NA coding protein psRNATarget
XM_020537934.1
ncRNA:24   AUGCAGGAUUGCCAAACGACACCG   1
  *|=**|||=|||||||||*|||||
targets:175   CAUCCCCUGACGGUUUGCGGUGGC   198

2.5 PREDICTED: Zea mays uncharacterized LOC100382157 (LOC100382157), transcript variant X1, mRNA NA coding protein psRNATarget
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