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BaseInfo

ncRNA ID	novel_zma_miR3260
Species	Zea mays
Class	miRNA
Genome position	Chr8:144493957-144494032 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583943
Length	24
Mature sequence(if miRNA)	53 - GUGUCUUAGGUGUGUUUUAUACUU - 76
Stem-loop(if miRNA)	--           UAA          A      GA    C   GUAUAAAGCAU   CUAAGAUAUA GUUUUA  UACA U   |||||||||||   |||||||||| ||||||  ||||   CAUAUUUUGUG   GAUUCUGUGU CAAGAU  AUGU C UU           -UG          -      --    C
Stem-loop sequence	GUAUAAAGCAUUAACUAAGAUAUAAGUUUUAGAUACACUCCUGUAUAGAACUGUGUCUUAGGUGUGUUUUAUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682726.2	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||||||||||||||||||||||| targets:2312   AAGUAUAAAACACACCUAAGACAC   2335 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100191216 (IDP141), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552990.1	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||||||||||||||||||||||| targets:2089   AAGUAUAAAACACACCUAAGACAC   2112 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100191216 (IDP141), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001136650.1	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||||||||||||||||||||||| targets:1550   AAGUAUAAAACACACCUAAGACAC   1573 Target Full Sequence	0.0	Zea mays uncharacterized LOC100191216 (IDP141), mRNA	NA	coding protein	psRNATarget
BT033252.1	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||||||||||||||||||||||| targets:1550   AAGUAUAAAACACACCUAAGACAC   1573 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0125J03 mRNA, complete cds	NA	coding protein	psRNATarget
BT040001.1	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||||||||||||||||||||||| targets:952   AAGUAUAAAACACACCUAAGACAC   975 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0057N09 mRNA, complete cds	NA	coding protein	psRNATarget
EU966555.1	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||*=*||=||||||||||||||* targets:1479   AAGCGCAAGACACACCUAAGACAG   1502 Target Full Sequence	3.0	Zea mays clone 295244 kynurenine--oxoglutarate transaminase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT061080.1	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||*=*||=||||||||||||||* targets:1474   AAGCGCAAGACACACCUAAGACAG   1497 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0095F16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156859.2	ncRNA:24   UUCAUAUUUUGUGUGGAUUCUGUG   1   |||*=*||=||||||||||||||* targets:1474   AAGCGCAAGACACACCUAAGACAG   1497 Target Full Sequence	3.0	Zea mays Pyridoxal phosphate (PLP)-dependent transferase superfamily protein (TIDP3358), mRNA	NA	coding protein	psRNATarget