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BaseInfo

ncRNA ID novel_zma_miR3255
Species Zea mays
Class miRNA
Genome position Chr5:198879698-198879772 [-]
Reference genome RefGen_v4
Source SRR2089715
Length 23
Mature sequence(if miRNA) 53 - UUGAGUGUGAUUGGAUGGGUUUA - 75
Stem-loop(if miRNA) ---   AG         ------AU   UUUAAAUUCCAAG
   UUG  UGUGAUUGG        GGG             U
   |||  |||||||||        |||
   AAU  AUACUAACU        UUA             A
CUA   CU         AUUUUUAA   UUUUUCAAACUGG
Stem-loop sequence UUGAGUGUGAUUGGAUGGGUUUAAAUUCCAAGUAGGUCAAACUUUUUAUUAAUUUUUAUCAAUCAUAUCUAAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549703.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:2342   UAAACCCAUCCAAUCUCACUCAA   2364

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:2282   UAAACCCAUCCAAUCUCACUCAA   2304

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:2275   UAAACCCAUCCAAUCUCACUCAA   2297

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:2147   UAAACCCAUCCAAUCUCACUCAA   2169

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:2146   UAAACCCAUCCAAUCUCACUCAA   2168

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:2074   UAAACCCAUCCAAUCUCACUCAA   2096

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  |||||||||||||||*|||||||
targets:449   UAAACCCAUCCAAUCUCACUCAA   471

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
XM_020545430.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:5798   CAAACCCAUCCAAUCCCACUCAA   5820

1.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1223   CAAACCCAUCCAAUCCCACUCAA   1245

1.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1193   CAAACCCAUCCAAUCCCACUCAA   1215

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1193   CAAACCCAUCCAAUCCCACUCAA   1215

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1075   CAAACCCAUCCAAUCCCACUCAA   1097

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1952   CAAACCCAUCCAAUCCCACUCAA   1974

1.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1952   CAAACCCAUCCAAUCCCACUCAA   1974

1.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:2494   CAAACCCAUCCAAUCCCACUCAA   2516

1.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001154031.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1809   CAAACCCAUCCAAUCCCACUCAA   1831

1.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1809   CAAACCCAUCCAAUCCCACUCAA   1831

1.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
BT088232.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1524   CAAACCCAUCCAAUCCCACUCAA   1546

1.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1524   CAAACCCAUCCAAUCCCACUCAA   1546

1.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
NM_001148918.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1460   CAAACCCAUCCAAUCCCACUCAA   1482

1.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:1460   CAAACCCAUCCAAUCCCACUCAA   1482

1.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:522   CAAACCCAUCCAAUCCCACUCAA   544

1.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:170   CAAACCCAUCCAAUCCCACUCAA   192

1.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:868   CAAACCCAUCCAAUCCCACUCAA   890

1.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:739   CAAACCCAUCCAAUCCCACUCAA   761

1.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
HI403094.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:92   CAAACCCAUCCAAUCCCACUCAA   114

1.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235135.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:92   CAAACCCAUCCAAUCCCACUCAA   114

1.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
LQ235224.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:92   CAAACCCAUCCAAUCCCACUCAA   114

1.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:92   CAAACCCAUCCAAUCCCACUCAA   114

1.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
JB163555.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:92   CAAACCCAUCCAAUCCCACUCAA   114

1.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:92   CAAACCCAUCCAAUCCCACUCAA   114

1.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:83   CAAACCCAUCCAAUCCCACUCAA   105

1.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:83   CAAACCCAUCCAAUCCCACUCAA   105

1.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:83   CAAACCCAUCCAAUCCCACUCAA   105

1.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:73   CAAACCCAUCCAAUCCCACUCAA   95

1.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
JB166354.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:73   CAAACCCAUCCAAUCUCACUCAA   95

1.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
JB166350.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:73   CAAACCCAUCCAAUCCCACUCAA   95

1.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
HI405893.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:73   CAAACCCAUCCAAUCUCACUCAA   95

1.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
HI405889.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:73   CAAACCCAUCCAAUCCCACUCAA   95

1.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
LQ238023.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||||||||||||*|||||||
targets:73   CAAACCCAUCCAAUCUCACUCAA   95

1.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
XM_008661718.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:2205   CAAACUCAUCCAAUCCCACUCAA   2227

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
BT062183.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:240   CAAACUCAUCCAAUCUCACUCAA   262

2.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
EZ064016.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:114   CAAACUCAUCCAAUCCCACUCAA   136

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
HI405877.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:81   CAAACUCAUCCAAUCUCACUCAA   103

2.5 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
LQ238007.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:81   CAAACUCAUCCAAUCUCACUCAA   103

2.5 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
JB166338.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:81   CAAACUCAUCCAAUCUCACUCAA   103

2.5 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
JB166363.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:74   CAAACUCAUCCAAUCCCACUCAA   96

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:74   CAAACUCAUCCAAUCCCACUCAA   96

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:74   CAAACUCAUCCAAUCCCACUCAA   96

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
EZ092645.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||=|||||||||*|||||||
targets:10   CAAACUCAUCCAAUCUCACUCAA   32

2.5 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
EZ064093.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  ||||||||*||||||*|||||||
targets:182   UAAACCCACCCAAUCCCACUCAA   204

2.5 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
BT069961.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *||||*|||||||||*|||||||
targets:104   CAAACACAUCCAAUCCCACUCAA   126

2.5 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
JB163551.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *|||||*||||||||*|||||||
targets:92   CAAACCAAUCCAAUCCCACUCAA   114

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235220.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *|||||*||||||||*|||||||
targets:92   CAAACCAAUCCAAUCCCACUCAA   114

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403090.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  *|||||*||||||||*|||||||
targets:92   CAAACCAAUCCAAUCCCACUCAA   114

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
XM_020542565.1
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  ****||=||||||||=|||||||
targets:4365   AUUCCCUAUCCAAUCGCACUCAA   4387

2.5 PREDICTED: Zea mays acyl-protein thioesterase 1 homolog 1 (LOC103635415), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657874.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  ****||=||||||||=|||||||
targets:2363   AUUCCCUAUCCAAUCGCACUCAA   2385

2.5 PREDICTED: Zea mays acyl-protein thioesterase 1 homolog 1 (LOC103635415), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657876.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  ****||=||||||||=|||||||
targets:2295   AUUCCCUAUCCAAUCGCACUCAA   2317

2.5 PREDICTED: Zea mays acyl-protein thioesterase 1 homolog 1 (LOC103635415), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008657877.2
ncRNA:23   AUUUGGGUAGGUUAGUGUGAGUU   1
  ****||=||||||||=|||||||
targets:901   AUUCCCUAUCCAAUCGCACUCAA   923

2.5 PREDICTED: Zea mays acyl-protein thioesterase 1 homolog 1 (LOC103635415), transcript variant X4, mRNA NA coding protein psRNATarget
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