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BaseInfo

ncRNA ID novel_zma_miR3254
Species Zea mays
Class miRNA
Genome position Chr5:219925801-219925907 [-]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 1 - GACUAAAAUGGAAUAAAAUGAUGG - 24
Stem-loop(if miRNA) --UA                    CCA      C                  C
    CAUUUUAUUCCAUUUUAGUU   AAAUUG CAAAUAUAGAAACUAAAA U
    ||||||||||||||||||||   |||||| |||||||||||||||||| C
    GUAAAAUAAGGUAAAAUCAG   UUUAAU GUUUAUAUCUUUGAUUUU U
GGUA                    AUA      A                  A
Stem-loop sequence UACAUUUUAUUCCAUUUUAGUUCCAAAAUUGCCAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCUAUAUUUGAUAAUUUAUAGACUAAAAUGGAAUAAAAUGAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235183.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |||||||||||||||||||||||*
targets:34   CCAUCAUUUUAUUCCAUUUUAGUG   57

1.0 Sequence 1178 from Patent EP2985353 NA coding protein psRNATarget
HI403053.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |||||||||||||||||||||||*
targets:34   CCAUCAUUUUAUUCCAUUUUAGUG   57

1.0 Sequence 1178 from Patent EP2074227 NA coding protein psRNATarget
JB163514.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |||||||||||||||||||||||*
targets:34   CCAUCAUUUUAUUCCAUUUUAGUG   57

1.0 Sequence 1178 from Patent EP2559767 NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||||||||||||||=||||||||*
targets:1572   CCAUCAUUUUAUUCUAUUUUAGUG   1595

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008654984.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||||||||||||||||||||||*|
targets:2937   CCAUCAUUUUAUUCCAUUUUAGAC   2960

1.5 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||||||||||||
targets:2103   CCUUCAUUUUAUUCCAUUUUAGUC   2126

0.0 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||||||||||||
targets:2103   CCUUCAUUUUAUUCCAUUUUAGUC   2126

0.0 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
JB163501.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||||||||||||||=||||||||*
targets:35   CCAUCAUUUUAUUCUAUUUUAGUG   58

2.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||||||||||||||=||||||||*
targets:35   CCAUCAUUUUAUUCUAUUUUAGUG   58

2.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
HI403040.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||||||||||||||=||||||||*
targets:35   CCAUCAUUUUAUUCUAUUUUAGUG   58

2.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=|||||||||
targets:842   CCUUCAUUUUAUUCUAUUUUAGUC   865

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
HI403052.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||||||||||=
targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56

1.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||||||||||=
targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56

1.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||||||||||=
targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56

1.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
BT019141.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:297   CCCUCCAUUUUAUUCCAUUUUAGUC   321

2.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
JB167174.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:172   CCCUCCAUUUUAUUCCAUUUUAGUC   196

2.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:172   CCCUCCAUUUUAUUCCAUUUUAGUC   196

2.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
HI406713.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:172   CCCUCCAUUUUAUUCCAUUUUAGUC   196

2.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
HI403391.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  *|||||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1516 from Patent EP2074227 NA coding protein psRNATarget
LQ235521.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  *|||||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1516 from Patent EP2985353 NA coding protein psRNATarget
JB163852.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  *|||||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1516 from Patent EP2559767 NA coding protein psRNATarget
JB163892.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  *|||||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1556 from Patent EP2559767 NA coding protein psRNATarget
LQ235561.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  *|||||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1556 from Patent EP2985353 NA coding protein psRNATarget
HI403431.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  *|||||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1556 from Patent EP2074227 NA coding protein psRNATarget
NM_001320812.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  *|*||||||||||=||||||||||
targets:2404   GCUUCAUUUUAUUUCAUUUUAGUC   2427

1.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
XM_008669344.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  *|*||||||||||=||||||||||
targets:2050   GCUUCAUUUUAUUUCAUUUUAGUC   2073

1.5 PREDICTED: Zea mays Protein HAPLESS 2 (LOC100274016), transcript variant X1, mRNA NA coding protein psRNATarget
BT061735.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  *|*||||||||||=||||||||||
targets:1922   GCUUCAUUUUAUUUCAUUUUAGUC   1945

1.5 Zea mays full-length cDNA clone ZM_BFb0178N21 mRNA, complete cds NA coding protein psRNATarget
NM_001148401.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  *|*||||||||||=||||||||||
targets:1922   GCUUCAUUUUAUUUCAUUUUAGUC   1945

1.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:1672   CCUUCAUUUUAUUCUAUUUUAGUG   1695

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-||||||||||=||||||||*
targets:1576   CUA-CAUUUUAUUCUAUUUUAGUA   1598

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
BT069618.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  *|*||||||||||=||||||||||
targets:1571   GCUUCAUUUUAUUUCAUUUUAGUC   1594

1.5 Zea mays full-length cDNA clone ZM_BFb0195L03 mRNA, complete cds NA coding protein psRNATarget
JB166880.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:81   CCCUCCAUUUUAUUCCAUUUUAGUC   105

2.0 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:81   CCCUCCAUUUUAUUCCAUUUUAGUC   105

2.0 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
HI406419.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|||||||||||||||||||
targets:81   CCCUCCAUUUUAUUCCAUUUUAGUC   105

2.0 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
HI403055.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:33   CCUUCAUUUUAUUCUAUUUUAGUA   56

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
JB163516.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:33   CCUUCAUUUUAUUCUAUUUUAGUA   56

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
JB163502.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||=||||||||||||*
targets:33   CCUUCAUUUUGUUCCAUUUUAGUA   56

2.0 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||=||||||||||||*
targets:33   CCUUCAUUUUGUUCCAUUUUAGUA   56

2.0 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:33   CCUUCAUUUUAUUCUAUUUUAGUA   56

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
HI403041.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||=||||||||||||*
targets:33   CCUUCAUUUUGUUCCAUUUUAGUA   56

2.0 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:33   CCUUCAUUUUAUUCUAUUUUAGUA   56

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
HI403050.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:33   CCUUCAUUUUAUUCUAUUUUAGUA   56

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||||||=||||||||*
targets:33   CCUUCAUUUUAUUCUAUUUUAGUA   56

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-|||||||||||||||||||=
targets:1004   CUA-CAUUUUAUUCCAUUUUAGUU   1026

1.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
HI410280.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||=||||||||||||*
targets:9   CCUUCAUUUUGUUCCAUUUUAGUA   32

2.0 Sequence 8405 from Patent EP2074227 NA coding protein psRNATarget
JB170741.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||=||||||||||||*
targets:9   CCUUCAUUUUGUUCCAUUUUAGUA   32

2.0 Sequence 8405 from Patent EP2559767 NA coding protein psRNATarget
LQ242410.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*|||||||=||||||||||||*
targets:9   CCUUCAUUUUGUUCCAUUUUAGUA   32

2.0 Sequence 8405 from Patent EP2985353 NA coding protein psRNATarget
BT036582.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-|||||||||||||||||||=
targets:847   CUA-CAUUUUAUUCCAUUUUAGUU   869

1.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-|||||||||||||||||||=
targets:847   CUA-CAUUUUAUUCCAUUUUAGUU   869

1.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-|||||||||||||||||||=
targets:584   CUA-CAUUUUAUUCCAUUUUAGUU   606

1.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
EU942443.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||*||||||||
targets:496   CCUUCAUUUUAUUCCUUUUUAGUC   519

1.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  |=*||-|||||||||||||||||||
targets:2154   CUCUCCAUUUUAUUCCAUUUUAGUC   2178

2.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=||-|||||||||=||||||||=
targets:1073   CUAU-AUUUUAUUCUAUUUUAGUU   1095

2.5 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
LQ235549.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
JB163880.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
JB163770.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
LQ235490.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1485 from Patent EP2985353 NA coding protein psRNATarget
JB163821.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1485 from Patent EP2559767 NA coding protein psRNATarget
HI403360.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1485 from Patent EP2074227 NA coding protein psRNATarget
LQ235439.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
LQ235400.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1395 from Patent EP2985353 NA coding protein psRNATarget
HI403419.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
HI403270.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1395 from Patent EP2074227 NA coding protein psRNATarget
JB163731.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1395 from Patent EP2559767 NA coding protein psRNATarget
HI403309.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
HI403265.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1390 from Patent EP2074227 NA coding protein psRNATarget
LQ235395.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1390 from Patent EP2985353 NA coding protein psRNATarget
JB163726.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1390 from Patent EP2559767 NA coding protein psRNATarget
JB163903.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1567 from Patent EP2559767 NA coding protein psRNATarget
LQ235572.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1567 from Patent EP2985353 NA coding protein psRNATarget
LQ235547.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1542 from Patent EP2985353 NA coding protein psRNATarget
HI403417.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1542 from Patent EP2074227 NA coding protein psRNATarget
HI403442.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1567 from Patent EP2074227 NA coding protein psRNATarget
JB163878.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **||||||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1542 from Patent EP2559767 NA coding protein psRNATarget
EZ060524.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-||||||||||=||||||||=
targets:76   CUA-CAUUUUAUUCUAUUUUAGUU   98

2.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
LQ235481.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1476 from Patent EP2985353 NA coding protein psRNATarget
HI403351.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1476 from Patent EP2074227 NA coding protein psRNATarget
JB163812.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1476 from Patent EP2559767 NA coding protein psRNATarget
JB163824.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1488 from Patent EP2559767 NA coding protein psRNATarget
LQ235578.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1573 from Patent EP2985353 NA coding protein psRNATarget
HI403363.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1488 from Patent EP2074227 NA coding protein psRNATarget
JB163909.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1573 from Patent EP2559767 NA coding protein psRNATarget
HI403448.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1573 from Patent EP2074227 NA coding protein psRNATarget
LQ235533.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1528 from Patent EP2985353 NA coding protein psRNATarget
HI403403.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1528 from Patent EP2074227 NA coding protein psRNATarget
JB163864.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1528 from Patent EP2559767 NA coding protein psRNATarget
LQ235493.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  =||--|||||||||||||||||||
targets:1   UCA--AUUUUAUUCCAUUUUAGUC   22

0.0 Sequence 1488 from Patent EP2985353 NA coding protein psRNATarget
EU956227.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||*|||||||*
targets:1273   CCUUCAUUUUAUUCCUUUUUAGUG   1296

2.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
HI403371.1
ncRNA:21   AG-UAAAAUAAGGUAAAAUCAG   1
  ||-|||||||||||||||||||
targets:1   UCUAUUUUAUUCCAUUUUAGUC   22

2.0 Sequence 1496 from Patent EP2074227 NA coding protein psRNATarget
JB163832.1
ncRNA:21   AG-UAAAAUAAGGUAAAAUCAG   1
  ||-|||||||||||||||||||
targets:1   UCUAUUUUAUUCCAUUUUAGUC   22

2.0 Sequence 1496 from Patent EP2559767 NA coding protein psRNATarget
LQ235501.1
ncRNA:21   AG-UAAAAUAAGGUAAAAUCAG   1
  ||-|||||||||||||||||||
targets:1   UCUAUUUUAUUCCAUUUUAGUC   22

2.0 Sequence 1496 from Patent EP2985353 NA coding protein psRNATarget
XM_008657966.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-||||||||||=||||||||*
targets:2   CUA-CAUUUUAUUCUAUUUUAGUA   24

2.5 PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA NA coding protein psRNATarget
JB167682.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||*|||||||*
targets:13   CCUUCAUUUUAUUCCUUUUUAGUG   36

2.5 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
LQ239351.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||*|||||||*
targets:13   CCUUCAUUUUAUUCCUUUUUAGUG   36

2.5 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
HI407221.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  ||*||||||||||||*|||||||*
targets:13   CCUUCAUUUUAUUCCUUUUUAGUG   36

2.5 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
LQ235369.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **|||||||||=||||||||||
targets:1   UCCAUUUUAUUUCAUUUUAGUC   22

1.5 Sequence 1364 from Patent EP2985353 NA coding protein psRNATarget
HI403239.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **|||||||||=||||||||||
targets:1   UCCAUUUUAUUUCAUUUUAGUC   22

1.5 Sequence 1364 from Patent EP2074227 NA coding protein psRNATarget
JB163700.1
ncRNA:22   UAGUAAAAUAAGGUAAAAUCAG   1
  **|||||||||=||||||||||
targets:1   UCCAUUUUAUUUCAUUUUAGUC   22

1.5 Sequence 1364 from Patent EP2559767 NA coding protein psRNATarget
EU945607.1
ncRNA:24   GGUAG-UAAAAUAAGGUAAAAUCAG   1
  ||*||-|*|||||||||||||||||
targets:146   CCCUCCAAUUUAUUCCAUUUUAGUC   170

3.0 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
XM_008660555.2
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|-||||||||||||*||||||=
targets:1922   CUA-CAUUUUAUUCCACUUUAGUU   1944

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
EZ052166.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=|*-||||||||||||||||||=
targets:784   CUAG-AUUUUAUUCCAUUUUAGUU   806

1.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EU957896.1
ncRNA:24   GGUA-GUAAAAUAAGGUAAAAUCAG   1
  ||*|-||||||||||||*||||||=
targets:1273   CCUUACAUUUUAUUCCACUUUAGUU   1297

2.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
JB163522.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=*|=||||||||||*|||||||*
targets:33   CUUUUAUUUUAUUCCUUUUUAGUA   56

2.5 Sequence 1186 from Patent EP2559767 NA coding protein psRNATarget
HI403061.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=*|=||||||||||*|||||||*
targets:33   CUUUUAUUUUAUUCCUUUUUAGUA   56

2.5 Sequence 1186 from Patent EP2074227 NA coding protein psRNATarget
LQ235191.1
ncRNA:24   GGUAGUAAAAUAAGGUAAAAUCAG   1
  |=*|=||||||||||*|||||||*
targets:33   CUUUUAUUUUAUUCCUUUUUAGUA   56

2.5 Sequence 1186 from Patent EP2985353 NA coding protein psRNATarget
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